# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ghj	79	0.1869		
3cdxA	354	0.3734		
1y8oB	128	0.3742	b.84.1.1	122759
1gjxA	81	0.4372	b.84.1.1	65222
1zkoA	136	0.6114		
2evbA	74	0.6451		
1qjoA	80	0.7345	b.84.1.1	28229
1k8mA	93	0.7393	b.84.1.1	68314
1bdoA	80	0.7557	b.84.1.1	28214
1htp	131	1.863		
1bdo	80	2.603		
1hpcA	131	2.923	b.84.1.1	28221
1ge8A	249	4.596	d.131.1.2,d.131.1.2	41398,41399
2qj8A	332	8.155		
1pfzA	380	9.593	b.50.1.2	26881
1aunA	208	12.28	b.25.1.1	23900
1p42A	270	13.68	d.14.1.7,d.14.1.7	87754,87755
1y2qA	143	14.75		
1iz5A	249	17.59	d.131.1.2,d.131.1.2	83834,83835
2hrvA	142	20.66	b.47.1.4	26429
1tq5A	242	22.05	b.82.1.12	119311
2pwwA	127	22.09		
2d1uA	104	23.14		
2cdpA	160	24.86		
2gtqA	867	24.93		
2qf7A	1165	25.09		
2nwhA	317	25.43		
2blrA	206	27.46	b.25.1.1	128741
1hfuA	503	31.25	b.6.1.3,b.6.1.3,b.6.1.3	65827,65828,65829
1uirA	314	33.75	c.66.1.17	99429
2omkA	231	34.38		
2dq6A	870	34.77		
1at0	145	35.99		
2bodX	286	36.23	c.6.1.1	128909
2d73A	738	36.33		
2jrrA	67	40.23		
1aozA	552	41.46	b.6.1.3,b.6.1.3,b.6.1.3	23124,23125,23126
2cavA	445	42.24	b.82.1.2,b.82.1.2	28094,28095
1inlA	296	43.73	c.66.1.17	66220
1avqA	228	44.82	c.52.1.13	33326
1z3qA	200	47.18		
2e63A	170	48.54		
1vqoA	240	50.27	b.34.5.3,b.40.4.5	120361,120362
1pjxA	314	53.24	b.68.6.1	104167
1uxxX	133	53.66	b.18.1.10	100169
1jer	138	55.10		
2gu1A	361	55.90		
2dqsA	995	55.98		
2q2bA	179	57.21		
2vhfA	374	59.42		
2ea7A	434	59.44		
3bw1A	96	59.99		
2bogX	286	64.77		
2qcvA	332	68.07		
1tdzA	272	68.48	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
2aukA	190	74.04		
2ckkA	127	74.14		
1a0iA	348	79.28	b.40.4.6,d.142.2.1	25363,41577
2qv8A	159	81.76		
1atnD	260	82.34	d.151.1.1	41793
2icsA	379	83.13	b.92.1.8,c.1.9.14	137241,137242
2hgsA	474	83.85	c.30.1.4,d.142.1.6	31722,75997
2yueA	168	85.05		
2f9hA	129	87.31	b.161.1.1	133162
2z2nA	299	88.35		
1bhuA	102	89.93	b.11.1.3	23631