# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ghj 79 0.09305 3cdxA 354 0.09741 1y8oB 128 0.09781 b.84.1.1 122759 1gjxA 81 0.1409 b.84.1.1 65222 1bdoA 80 0.3652 b.84.1.1 28214 2evbA 74 0.4216 1zkoA 136 0.4391 1htp 131 0.4852 1qjoA 80 0.5610 b.84.1.1 28229 1k8mA 93 0.5779 b.84.1.1 68314 1hpcA 131 0.8690 b.84.1.1 28221 1bdo 80 1.003 2qj8A 332 2.196 1a8d 452 3.323 1tq5A 242 3.831 b.82.1.12 119311 1ge8A 249 4.363 d.131.1.2,d.131.1.2 41398,41399 1at0 145 5.843 2d73A 738 5.961 1i7pA 274 7.950 b.43.4.2,c.25.1.1 66048,66049 2aukA 190 9.034 1vqoA 240 14.56 b.34.5.3,b.40.4.5 120361,120362 2cdpA 160 15.70 1pfzA 380 16.32 b.50.1.2 26881 1aunA 208 19.00 b.25.1.1 23900 1jer 138 19.81 1p42A 270 19.87 d.14.1.7,d.14.1.7 87754,87755 1aozA 552 20.00 b.6.1.3,b.6.1.3,b.6.1.3 23124,23125,23126 2gu1A 361 21.05 2d1uA 104 21.16 2nwhA 317 21.51 2ftbA 125 21.72 b.60.1.2 134057 2cavA 445 22.05 b.82.1.2,b.82.1.2 28094,28095 1fzqA 181 22.65 c.37.1.8 32060 1pamA 686 23.55 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21846,22515,27753,28740 1z92B 219 24.04 g.18.1.1,g.18.1.1 124738,124739 1d0hA 469 25.23 b.29.1.6,b.42.4.2 24265,25610 2z2nA 299 25.78 2yueA 168 26.23 1ftpA 133 27.09 b.60.1.2 27199 1a0iA 348 27.44 b.40.4.6,d.142.2.1 25363,41577 2phcB 225 28.42 2bklA 695 28.96 1diwA 441 28.98 b.29.1.6,b.42.4.2 24264,25609 2f9hA 129 29.31 b.161.1.1 133162 2blrA 206 29.84 b.25.1.1 128741 1mzyA 333 30.48 b.6.1.3,b.6.1.3 103848,103849 1iz5A 249 30.69 d.131.1.2,d.131.1.2 83834,83835 1jj2A 239 31.96 b.34.5.3,b.40.4.5 63084,63085 2zbwA 335 32.37 1dgwA 178 32.65 b.82.1.2 28090 2ea7A 434 33.68 1hfuA 503 34.87 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 2hrgA 496 36.36 1p6pA 125 37.66 b.60.1.2 87839 2e63A 170 37.93 2pwwA 127 38.88 1ajaA 449 39.31 c.76.1.1 35010 1gp6A 356 39.49 b.82.2.1 65441 1z3qA 200 40.87 1aac 105 41.60 2j58A 359 43.09 1n6eA 1071 43.65 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 2dc4A 165 44.48 2omkA 231 45.13 2polA 366 45.63 d.131.1.1,d.131.1.1,d.131.1.1 41356,41357,41358 2debA 653 45.77 2jrrA 67 46.26 2ckkA 127 46.27 2sli 679 46.61 2q2bA 179 47.21 2bz6L 53 47.74 g.3.11.1 129553 2hsiA 282 50.34 1y2qA 143 50.71 1tw4A 125 51.06 b.60.1.2 112690 1zpuA 534 51.71 2qo4A 126 52.13 1sbxA 106 52.37 a.6.1.4 105414 1crzA 403 53.20 b.68.4.1,c.51.2.1 27629,33211 2hdvA 111 53.60 2h5uA 499 53.95 1pjxA 314 56.91 b.68.6.1 104167 1ok7A 366 57.03 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 2eixA 243 57.48 1kwnA 207 58.49 b.25.1.1 77568 2qv8A 159 58.87 1hcz 252 59.14 2qf7A 1165 61.02 1rwiA 270 61.31 b.68.9.1 97987 2ov0A 105 62.05 2g9iA 249 62.90 d.340.1.1 134806 1yu4A 381 63.20 b.163.1.1,d.169.1.8 124033,124034 1yu2A 381 63.55 b.163.1.1,d.169.1.8 124029,124030 1xsjA 778 65.63 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 1yu3A 381 65.85 b.163.1.1,d.169.1.8 124031,124032 1yu1A 381 66.97 b.163.1.1,d.169.1.8 124027,124028 2pieA 138 67.56 1rl2A 137 67.61 b.34.5.3,b.40.4.5 24610,25342 1bypA 99 67.96 b.6.1.1 22858 1thv 207 68.18 2bazA 142 69.24 2ih8A 559 70.19 b.6.1.3,b.6.1.3,b.6.1.3 137407,137408,137409 2hc8A 113 71.86 2hrvA 142 71.96 b.47.1.4 26429 2zbvA 263 72.45 1w9yA 319 72.90 b.82.2.1 120801 2hnxA 136 74.35 b.60.1.2 136633 2gbaA 105 74.57 1ywmA 200 74.59 2oizA 361 76.86 1bhuA 102 78.77 b.11.1.3 23631 2bodX 286 78.81 c.6.1.1 128909 1f3zA 161 78.88 b.84.3.1 28273 1vhmA 195 78.90 d.110.2.1 100691 1e2tA 284 79.06 d.3.1.5 37121 1oq1A 223 81.88 b.29.1.17 93408 1bli 483 82.01 1ndh 272 83.38 1gycA 499 86.98 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 2h4tA 626 87.58 1yvvA 336 88.61