# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3cdxA	354	0.2309		
1ghj	79	0.2373		
1gjxA	81	0.3452	b.84.1.1	65222
1y8oB	128	0.4054	b.84.1.1	122759
1k8mA	93	0.5308	b.84.1.1	68314
1bdoA	80	0.6357	b.84.1.1	28214
1qjoA	80	0.7197	b.84.1.1	28229
1zkoA	136	0.9869		
2evbA	74	1.022		
1htp	131	1.171		
1hpcA	131	2.273	b.84.1.1	28221
1bdo	80	3.013		
1pfzA	380	4.909	b.50.1.2	26881
1ge8A	249	5.000	d.131.1.2,d.131.1.2	41398,41399
2qj8A	332	6.615		
1iz5A	249	8.618	d.131.1.2,d.131.1.2	83834,83835
1at0	145	8.830		
2z2nA	299	10.51		
2nwhA	317	13.98		
2cdpA	160	14.37		
1p42A	270	15.10	d.14.1.7,d.14.1.7	87754,87755
2d73A	738	16.74		
1vqoA	240	17.90	b.34.5.3,b.40.4.5	120361,120362
1y2qA	143	19.64		
2pwwA	127	24.10		
2d1uA	104	26.15		
2blrA	206	26.32	b.25.1.1	128741
2aukA	190	30.93		
2bodX	286	31.27	c.6.1.1	128909
1pjxA	314	31.37	b.68.6.1	104167
1tq5A	242	32.06	b.82.1.12	119311
2ftbA	125	32.36	b.60.1.2	134057
2dc4A	165	33.37		
2hrvA	142	33.78	b.47.1.4	26429
1uxxX	133	41.31	b.18.1.10	100169
2qcvA	332	42.93		
1rliA	184	48.27	c.23.5.6	97647
1z3qA	200	49.41		
2qo4A	126	51.83		
2gu1A	361	54.51		
2bogX	286	55.49		
2oizA	361	57.53		
2debA	653	58.98		
2ckkA	127	61.42		
1jj2A	239	62.87	b.34.5.3,b.40.4.5	63084,63085
1f0xA	571	63.90	d.58.32.2,d.145.1.1	39483,41746
2rdeA	251	65.81		
1rkd	309	66.07		
2cavA	445	68.77	b.82.1.2,b.82.1.2	28094,28095
2ga9A	297	70.47	c.66.1.25	134885
1jer	138	75.20		
1a0iA	348	76.53	b.40.4.6,d.142.2.1	25363,41577
2jrrA	67	76.85		
2omkA	231	77.84		
2dqsA	995	78.96		
2q2bA	179	80.10		
1avqA	228	81.36	c.52.1.13	33326
1yk3A	210	81.99	d.108.1.1	123493
1rkdA	309	86.72	c.72.1.1	34928