# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3cdxA	354	0.1444		
1ghj	79	0.2085		
1gjxA	81	0.3282	b.84.1.1	65222
1y8oB	128	0.3354	b.84.1.1	122759
1bdoA	80	0.4609	b.84.1.1	28214
1k8mA	93	0.4850	b.84.1.1	68314
1qjoA	80	0.5727	b.84.1.1	28229
2evbA	74	0.6126		
1zkoA	136	0.8861		
1htp	131	1.084		
1bdo	80	2.247		
1hpcA	131	2.388	b.84.1.1	28221
1pfzA	380	3.860	b.50.1.2	26881
2qj8A	332	4.973		
2cdpA	160	10.40		
1iz5A	249	10.54	d.131.1.2,d.131.1.2	83834,83835
1ge8A	249	10.74	d.131.1.2,d.131.1.2	41398,41399
1at0	145	11.62		
1p42A	270	13.34	d.14.1.7,d.14.1.7	87754,87755
1y2qA	143	15.56		
1vqoA	240	18.83	b.34.5.3,b.40.4.5	120361,120362
2nwhA	317	20.37		
1tq5A	242	20.48	b.82.1.12	119311
2blrA	206	23.04	b.25.1.1	128741
2d73A	738	26.44		
1uxxX	133	27.49	b.18.1.10	100169
2pwwA	127	31.16		
2bodX	286	32.58	c.6.1.1	128909
2aukA	190	33.32		
2z2nA	299	34.75		
2dc4A	165	36.86		
2d1uA	104	37.96		
1z3qA	200	38.89		
2hrvA	142	44.98	b.47.1.4	26429
1jer	138	46.33		
2debA	653	47.15		
2f9hA	129	48.04	b.161.1.1	133162
2ckkA	127	49.68		
2q2bA	179	52.38		
2cavA	445	54.12	b.82.1.2,b.82.1.2	28094,28095
2gu1A	361	55.82		
1a0iA	348	56.31	b.40.4.6,d.142.2.1	25363,41577
2dqsA	995	58.06		
2qcvA	332	59.32		
2omkA	231	61.59		
2bogX	286	62.04		
2rdeA	251	64.30		
1dpeA	507	64.55	c.94.1.1	35799
2jrrA	67	66.20		
1pjxA	314	67.91	b.68.6.1	104167
1jj2A	239	68.67	b.34.5.3,b.40.4.5	63084,63085
1plqA	258	70.03	d.131.1.2,d.131.1.2	41388,41389
2ga9A	297	72.46	c.66.1.25	134885
1bhuA	102	73.51	b.11.1.3	23631
1f0xA	571	76.48	d.58.32.2,d.145.1.1	39483,41746
1twfB	1224	78.22	e.29.1.1	112726
1rliA	184	79.52	c.23.5.6	97647
1hw7A	255	79.55	d.193.1.1	61297
2j58A	359	81.65		
1avqA	228	82.21	c.52.1.13	33326
1wryA	121	84.71		
3bjkA	153	88.50		
2dq6A	870	88.86