# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3cdxA	354	0.2027		
1ghj	79	0.2057		
1y8oB	128	0.2846	b.84.1.1	122759
1gjxA	81	0.3052	b.84.1.1	65222
1bdoA	80	0.4234	b.84.1.1	28214
1k8mA	93	0.4765	b.84.1.1	68314
1qjoA	80	0.6252	b.84.1.1	28229
2evbA	74	0.6367		
1zkoA	136	0.7340		
1htp	131	0.9000		
1bdo	80	1.959		
1hpcA	131	2.281	b.84.1.1	28221
2qj8A	332	3.426		
1pfzA	380	5.377	b.50.1.2	26881
1at0	145	7.086		
1ge8A	249	7.851	d.131.1.2,d.131.1.2	41398,41399
1iz5A	249	9.99	d.131.1.2,d.131.1.2	83834,83835
1p42A	270	11.71	d.14.1.7,d.14.1.7	87754,87755
2cdpA	160	12.00		
2nwhA	317	14.73		
1tq5A	242	18.30	b.82.1.12	119311
1uxxX	133	19.68	b.18.1.10	100169
1y2qA	143	20.32		
2pwwA	127	22.56		
1vqoA	240	23.10	b.34.5.3,b.40.4.5	120361,120362
2z2nA	299	26.43		
2d1uA	104	26.82		
2f9hA	129	28.29	b.161.1.1	133162
2blrA	206	28.44	b.25.1.1	128741
2d73A	738	33.34		
2aukA	190	34.23		
2qcvA	332	34.79		
1jer	138	34.80		
2bodX	286	40.11	c.6.1.1	128909
2hrvA	142	40.35	b.47.1.4	26429
1pjxA	314	42.64	b.68.6.1	104167
2gu1A	361	44.00		
1a0iA	348	44.54	b.40.4.6,d.142.2.1	25363,41577
1z3qA	200	44.88		
2debA	653	48.14		
2dc4A	165	48.38		
1f0xA	571	49.95	d.58.32.2,d.145.1.1	39483,41746
1dpeA	507	51.54	c.94.1.1	35799
1kk1A	410	53.83	b.43.3.1,b.44.1.1,c.37.1.8	72634,72635,72636
2jrrA	67	58.60		
2ckkA	127	60.28		
2pkdA	111	61.21		
1bhuA	102	63.35	b.11.1.3	23631
1plqA	258	64.23	d.131.1.2,d.131.1.2	41388,41389
2cavA	445	65.72	b.82.1.2,b.82.1.2	28094,28095
2q2bA	179	66.16		
2dqsA	995	66.42		
2omkA	231	66.93		
1nif	340	69.43		
1jj2A	239	72.66	b.34.5.3,b.40.4.5	63084,63085
2j58A	359	73.21		
2bogX	286	74.45		
1rkd	309	76.00		
2rdeA	251	76.53		
1rliA	184	77.89	c.23.5.6	97647
1g1tA	157	79.76	d.169.1.1,g.3.11.1	65104,65105
2dq6A	870	80.98		
1thqA	170	83.63	f.4.1.2	106920
1avqA	228	83.97	c.52.1.13	33326
1tdzA	272	85.59	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
2fliA	220	86.35	c.1.2.2	133714