# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ghj	79	0.4627		
1gjxA	81	0.5204	b.84.1.1	65222
3cdxA	354	0.7035		
1y8oB	128	0.7197	b.84.1.1	122759
1k8mA	93	1.346	b.84.1.1	68314
1qjoA	80	1.731	b.84.1.1	28229
2evbA	74	1.903		
1bdoA	80	2.530	b.84.1.1	28214
1zkoA	136	2.971		
1htp	131	3.085		
2qj8A	332	4.446		
1hpcA	131	9.420	b.84.1.1	28221
1ge8A	249	10.68	d.131.1.2,d.131.1.2	41398,41399
1pfzA	380	10.95	b.50.1.2	26881
1bdo	80	12.43		
1at0	145	20.26		
1a8d	452	20.51		
2eveA	157	21.09	b.122.1.8	132427
1diwA	441	40.19	b.29.1.6,b.42.4.2	24264,25609
2nwhA	317	41.29		
1p42A	270	42.88	d.14.1.7,d.14.1.7	87754,87755
2hrvA	142	43.39	b.47.1.4	26429
1a0iA	348	44.31	b.40.4.6,d.142.2.1	25363,41577
1wgwA	99	58.63	a.24.13.1	114625
1cfrA	285	59.43	c.52.1.7	33312
2q2bA	179	66.10		
1d0hA	469	66.44	b.29.1.6,b.42.4.2	24265,25610
1h4rA	314	67.82	a.11.2.1,b.55.1.5,d.15.1.4	65616,65617,65618
1tv9A	335	68.90	a.60.6.1,a.60.12.1,d.218.1.2	112675,112676,112677
1rliA	184	73.23	c.23.5.6	97647
1y2qA	143	75.65		
2cdpA	160	78.08		
1bpyA	335	79.81	a.60.6.1,a.60.12.1,d.218.1.2	17980,75819,75820
1el5A	389	85.97	c.3.1.2,d.16.1.3	30369,37937
1bifA	469	89.44	c.37.1.7,c.60.1.4	31961,34003