# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ghj	79	0.1602		
1gjxA	81	0.2241	b.84.1.1	65222
3cdxA	354	0.2619		
1y8oB	128	0.3401	b.84.1.1	122759
1k8mA	93	0.3862	b.84.1.1	68314
1qjoA	80	0.3962	b.84.1.1	28229
1zkoA	136	0.4618		
1htp	131	0.6960		
1bdoA	80	0.6986	b.84.1.1	28214
2evbA	74	0.7727		
1hpcA	131	1.227	b.84.1.1	28221
1ge8A	249	2.938	d.131.1.2,d.131.1.2	41398,41399
1bdo	80	3.843		
2nwhA	317	5.094		
2qj8A	332	5.282		
1iz5A	249	7.409	d.131.1.2,d.131.1.2	83834,83835
2hrvA	142	7.494	b.47.1.4	26429
1pfzA	380	7.833	b.50.1.2	26881
1vqoA	240	12.68	b.34.5.3,b.40.4.5	120361,120362
1tq5A	242	13.22	b.82.1.12	119311
2d1uA	104	13.86		
2pwwA	127	14.45		
2d73A	738	15.28		
1at0	145	16.23		
1p42A	270	16.41	d.14.1.7,d.14.1.7	87754,87755
2qcvA	332	16.52		
2z2nA	299	16.73		
1y2qA	143	22.81		
1rkd	309	29.04		
2e63A	170	29.34		
2cdpA	160	30.08		
1jj2A	239	30.27	b.34.5.3,b.40.4.5	63084,63085
2bodX	286	34.70	c.6.1.1	128909
1vm7A	311	34.97	c.72.1.1	108884
2oizA	361	39.43		
2dqsA	995	43.39		
2fv7A	331	43.40	c.72.1.1	134197
1rkdA	309	44.12	c.72.1.1	34928
2f9hA	129	45.10	b.161.1.1	133162
2pkdA	111	45.25		
2cavA	445	46.71	b.82.1.2,b.82.1.2	28094,28095
2yueA	168	47.52		
2v78A	313	50.30		
1pjxA	314	50.80	b.68.6.1	104167
2qo4A	126	51.54		
2ftbA	125	51.62	b.60.1.2	134057
2i7nA	360	52.68		
2aukA	190	52.90		
2omkA	231	53.36		
1rliA	184	54.46	c.23.5.6	97647
2gc7A	386	55.35	b.69.2.1	134954
2ga9A	297	55.64	c.66.1.25	134885
2jrrA	67	58.62		
2ckkA	127	58.99		
2qhpA	296	60.27		
1wpgA	994	61.99	b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1	114806,114807,114808,114809
2gu1A	361	62.01		
2bogX	286	63.41		
1avqA	228	64.97	c.52.1.13	33326
2bklA	695	66.50		
2fliA	220	70.22	c.1.2.2	133714
2j58A	359	71.58		
2blrA	206	73.69	b.25.1.1	128741
2vhfA	374	74.49		
1tdzA	272	74.98	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
2icsA	379	76.23	b.92.1.8,c.1.9.14	137241,137242
2debA	653	79.39		
1v1aA	309	80.63	c.72.1.1	100249
2sli	679	81.79		
1bhuA	102	84.13	b.11.1.3	23631
1jer	138	84.43