# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3cdxA 354 0.6797 1ghj 79 0.7676 1gjxA 81 0.8307 b.84.1.1 65222 1g1sA 162 0.8836 d.169.1.1,g.3.11.1 65100,65101 2ea7A 434 0.9143 1y8oB 128 1.268 b.84.1.1 122759 1k8mA 93 1.288 b.84.1.1 68314 1bdoA 80 1.326 b.84.1.1 28214 1qjoA 80 1.412 b.84.1.1 28229 1at0 145 1.479 2qj8A 332 1.914 1zkoA 136 2.470 1htp 131 2.606 2evbA 74 2.681 1ge8A 249 2.891 d.131.1.2,d.131.1.2 41398,41399 1hpcA 131 4.306 b.84.1.1 28221 1xyfA 436 4.599 b.42.2.1,c.1.8.3 25577,28909 2cavA 445 5.048 b.82.1.2,b.82.1.2 28094,28095 1tq5A 242 6.183 b.82.1.12 119311 1qw9A 502 6.640 b.71.1.2,c.1.8.3 96466,96467 1fm2B 520 6.646 1bdo 80 6.963 1e9lA 377 7.096 c.1.8.5,d.26.3.1 59395,59396 1yo8A 634 7.627 1g1tA 157 8.096 d.169.1.1,g.3.11.1 65104,65105 1rwiA 270 8.401 b.68.9.1 97987 2pwwA 127 12.35 1jv1A 505 13.10 c.68.1.5 71892 1iz5A 249 13.84 d.131.1.2,d.131.1.2 83834,83835 2z2nA 299 13.88 2uzxB 727 14.58 1plqA 258 17.26 d.131.1.2,d.131.1.2 41388,41389 1smrA 335 17.62 b.50.1.2 26878 2j58A 359 17.72 1d0cA 444 18.15 d.174.1.1 64769 1qopB 396 19.08 c.79.1.1 35270 1vqoA 240 20.34 b.34.5.3,b.40.4.5 120361,120362 1qmeA 702 21.70 d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 1askA 127 22.28 d.17.4.2 38094 1gk1B 522 22.63 2blnA 305 25.06 b.46.1.1,c.65.1.1 128734,128735 2hhiA 204 25.32 1aunA 208 26.28 b.25.1.1 23900 2aaa 484 26.61 1esl 162 26.93 1v0eA 666 27.21 b.68.1.2,b.108.1.3 113466,113467 2hivA 621 28.85 1kk1A 410 29.01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1xnzA 264 32.66 d.127.1.1 115673 2omkA 231 35.93 1l1nA 183 36.72 b.47.1.4 73476 1gypA 358 38.75 c.2.1.3,d.81.1.1 30004,39919 2f9hA 129 41.13 b.161.1.1 133162 2bklA 695 42.59 2qv8A 159 43.00 2f02A 323 44.86 c.72.1.1 132649 1ig3A 263 46.36 b.82.6.1,c.100.1.1 62358,62359 1hfuA 503 46.51 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 2b8nA 429 46.76 c.118.1.1 128093 2blrA 206 46.83 b.25.1.1 128741 1po0A 751 48.18 f.4.3.3 94960 2d3qA 442 49.24 d.58.4.14 131214 1rwzA 245 49.24 d.131.1.2,d.131.1.2 98005,98006 1ihgA 370 49.54 a.118.8.1,b.62.1.1 62380,62381 1yloA 348 49.95 b.49.3.1,c.56.5.4 123659,123660 1xkwA 665 51.08 1dpjA 329 52.90 b.50.1.2 26828 2d1uA 104 53.59 2h4aA 325 54.50 2cdpA 160 55.95 1ii2A 524 56.65 c.91.1.1,c.109.1.1 66146,66147 2ckkA 127 58.19 2pyxA 526 58.63 1rtuA 114 58.83 d.1.1.4 36139 2e63A 170 59.12 1gttA 429 61.61 d.177.1.1,d.177.1.1 70529,70530 1q7fA 286 63.12 b.68.9.1 96036 4aahA 571 63.22 b.70.1.1 27678 2qedA 258 67.62 1dgwA 178 69.02 b.82.1.2 28090 4matA 278 71.55 d.127.1.1 41150 2hi2A 158 72.09 1mc0A 368 73.63 d.110.2.1,d.110.2.1 78937,78938 2aamA 309 74.04 c.1.8.15 126489 2f0xA 148 74.70 d.38.1.5 132673 1i8aA 189 74.97 b.1.9.2 61951 1mkaA 171 75.71 d.38.1.2 38543 2bsdA 264 76.31 b.21.1.3,b.108.1.4,b.163.1.2 129081,129082,129083 1wruA 379 76.61 1twfA 1733 76.84 e.29.1.2 112725 1ea0A 1479 77.09 b.80.4.1,c.1.4.1,d.153.1.1 64854,64855,64856 1e1aA 314 81.81 b.68.6.1 59155 1foaA 348 81.89 c.68.1.10 59929 2gc7A 386 83.00 b.69.2.1 134954 2cmuA 342 85.20 1hy7A 173 85.35 d.92.1.11 65957 1oq1A 223 85.61 b.29.1.17 93408 2r3uA 211 85.79 2d73A 738 86.48 1lf6A 684 86.66 a.102.1.5,b.30.5.5 77918,77919 1jj2A 239 86.75 b.34.5.3,b.40.4.5 63084,63085 1jer 138 86.91 1wp5A 323 87.08 b.68.10.1 114780 1blxA 326 87.32 d.144.1.7 41596 1uxxX 133 88.25 b.18.1.10 100169