# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ghj	79	0.2007		
3cdxA	354	0.2180		
1gjxA	81	0.3152	b.84.1.1	65222
1k8mA	93	0.4300	b.84.1.1	68314
1y8oB	128	0.4500	b.84.1.1	122759
1qjoA	80	0.4707	b.84.1.1	28229
1zkoA	136	0.6106		
1bdoA	80	0.7324	b.84.1.1	28214
1htp	131	0.7333		
2evbA	74	0.7830		
1ge8A	249	1.182	d.131.1.2,d.131.1.2	41398,41399
1hpcA	131	1.254	b.84.1.1	28221
1bdo	80	2.949		
2qj8A	332	3.289		
1pfzA	380	4.804	b.50.1.2	26881
2pwwA	127	6.776		
1iz5A	249	8.125	d.131.1.2,d.131.1.2	83834,83835
1tq5A	242	9.469	b.82.1.12	119311
1p42A	270	14.13	d.14.1.7,d.14.1.7	87754,87755
2nwhA	317	14.39		
1vqoA	240	15.32	b.34.5.3,b.40.4.5	120361,120362
1at0	145	15.77		
2f9hA	129	17.81	b.161.1.1	133162
2debA	653	20.41		
2cdpA	160	22.41		
2z2nA	299	26.33		
1y2qA	143	26.40		
2dqsA	995	29.51		
2cavA	445	29.80	b.82.1.2,b.82.1.2	28094,28095
2d73A	738	30.87		
2pkdA	111	31.37		
2d1uA	104	34.60		
1wpgA	994	35.25	b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1	114806,114807,114808,114809
1wryA	121	36.57		
2fliA	220	38.93	c.1.2.2	133714
1jj2A	239	38.94	b.34.5.3,b.40.4.5	63084,63085
2jrrA	67	39.72		
2blrA	206	41.60	b.25.1.1	128741
2qf7A	1165	42.39		
1yleA	342	46.43	d.108.1.8	123647
2hrvA	142	46.52	b.47.1.4	26429
2bodX	286	47.76	c.6.1.1	128909
2qcvA	332	51.50		
1jer	138	52.01		
1aunA	208	54.32	b.25.1.1	23900
1thqA	170	55.75	f.4.1.2	106920
2aukA	190	56.55		
1bhuA	102	56.71	b.11.1.3	23631
2gu1A	361	57.92		
1z3qA	200	61.44		
1hw7A	255	61.91	d.193.1.1	61297
1hfuA	503	62.02	b.6.1.3,b.6.1.3,b.6.1.3	65827,65828,65829
2i7nA	360	62.46		
2gtqA	867	64.12		
1avqA	228	64.95	c.52.1.13	33326
1dpeA	507	65.19	c.94.1.1	35799
1rkd	309	65.48		
2e63A	170	67.34		
1uqwA	509	69.72	c.94.1.1	99799
2yueA	168	69.99		
1kk1A	410	71.65	b.43.3.1,b.44.1.1,c.37.1.8	72634,72635,72636
2dq6A	870	73.29		
2qv8A	159	74.11		
2ckkA	127	74.66		
2bklA	695	75.73		
1pamA	686	75.82	b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1	21846,22515,27753,28740
1t5eA	360	80.07	f.46.1.1	106436
1zud2	66	86.31		
1vm7A	311	88.69	c.72.1.1	108884
2bogX	286	88.89