# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ghj	79	0.1678		
1gjxA	81	0.2710	b.84.1.1	65222
3cdxA	354	0.2889		
1y8oB	128	0.3554	b.84.1.1	122759
1k8mA	93	0.6587	b.84.1.1	68314
1zkoA	136	0.8935		
1qjoA	80	1.091	b.84.1.1	28229
1bdoA	80	1.140	b.84.1.1	28214
1htp	131	1.317		
2evbA	74	1.336		
1hpcA	131	2.312	b.84.1.1	28221
1ge8A	249	6.699	d.131.1.2,d.131.1.2	41398,41399
1bdo	80	6.842		
2qj8A	332	9.376		
1pfzA	380	9.742	b.50.1.2	26881
2cdpA	160	16.93		
1p42A	270	18.93	d.14.1.7,d.14.1.7	87754,87755
1iz5A	249	20.00	d.131.1.2,d.131.1.2	83834,83835
2pwwA	127	21.15		
1at0	145	22.10		
1g1tA	157	25.38	d.169.1.1,g.3.11.1	65104,65105
1jer	138	26.60		
2bodX	286	27.44	c.6.1.1	128909
1tq5A	242	31.51	b.82.1.12	119311
2nwhA	317	32.33		
2i7nA	360	32.86		
2d1uA	104	34.63		
1uxxX	133	37.74	b.18.1.10	100169
2d73A	738	39.40		
2blrA	206	41.27	b.25.1.1	128741
2jrrA	67	43.56		
1bhuA	102	46.30	b.11.1.3	23631
2qv8A	159	46.63		
2debA	653	47.85		
2f9hA	129	48.38	b.161.1.1	133162
2bogX	286	48.62		
2omkA	231	51.18		
1y2qA	143	51.46		
1aunA	208	52.67	b.25.1.1	23900
2j58A	359	55.12		
2q2bA	179	56.56		
1tdzA	272	57.24	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
2hrvA	142	60.42	b.47.1.4	26429
1vqoA	240	60.57	b.34.5.3,b.40.4.5	120361,120362
2dc4A	165	63.00		
2rijA	387	71.22		
1thqA	170	73.77	f.4.1.2	106920
1pamA	686	76.75	b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1	21846,22515,27753,28740
2bklA	695	77.99		
2aukA	190	78.36		
1hw7A	255	79.40	d.193.1.1	61297
1jykA	254	79.52	c.68.1.13	67458
2ga9A	297	79.94	c.66.1.25	134885
1rliA	184	81.63	c.23.5.6	97647
2pkdA	111	86.41		
1kk1A	410	87.58	b.43.3.1,b.44.1.1,c.37.1.8	72634,72635,72636