# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ghj	79	0.1711		
1gjxA	81	0.2366	b.84.1.1	65222
1y8oB	128	0.3201	b.84.1.1	122759
3cdxA	354	0.3823		
1qjoA	80	0.8826	b.84.1.1	28229
1k8mA	93	1.052	b.84.1.1	68314
1zkoA	136	1.111		
1htp	131	1.294		
2evbA	74	1.318		
1bdoA	80	1.522	b.84.1.1	28214
1hpcA	131	2.481	b.84.1.1	28221
1ge8A	249	4.167	d.131.1.2,d.131.1.2	41398,41399
1bdo	80	7.374		
1pfzA	380	7.748	b.50.1.2	26881
2qj8A	332	9.814		
2d73A	738	13.93		
2pwwA	127	14.39		
2d1uA	104	14.62		
1tq5A	242	18.31	b.82.1.12	119311
1p42A	270	18.39	d.14.1.7,d.14.1.7	87754,87755
1a0iA	348	22.48	b.40.4.6,d.142.2.1	25363,41577
2bodX	286	24.67	c.6.1.1	128909
1at0	145	26.43		
2nwhA	317	27.77		
1jer	138	29.00		
1y2qA	143	30.18		
1iz5A	249	34.85	d.131.1.2,d.131.1.2	83834,83835
2hrvA	142	37.64	b.47.1.4	26429
2i7nA	360	38.86		
2cdpA	160	44.36		
2jrrA	67	47.11		
2aukA	190	49.24		
2bogX	286	51.41		
2f9hA	129	54.17	b.161.1.1	133162
3bw1A	96	54.64		
2ga9A	297	55.39	c.66.1.25	134885
2qf7A	1165	60.56		
1pjxA	314	62.00	b.68.6.1	104167
1ywmA	200	64.52		
2rijA	387	68.65		
2omkA	231	72.75		
2yueA	168	77.47		
1rliA	184	77.89	c.23.5.6	97647
2eveA	157	78.81	b.122.1.8	132427
2fliA	220	79.05	c.1.2.2	133714
1yk3A	210	79.12	d.108.1.1	123493
1hw7A	255	79.21	d.193.1.1	61297
2e63A	170	80.38		
2debA	653	83.18		
1bhuA	102	84.17	b.11.1.3	23631
2cavA	445	87.11	b.82.1.2,b.82.1.2	28094,28095
1wryA	121	87.62		
1vqoA	240	87.95	b.34.5.3,b.40.4.5	120361,120362
1pamA	686	89.03	b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1	21846,22515,27753,28740
1aunA	208	89.39	b.25.1.1	23900