# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ghj	79	0.1191		
1gjxA	81	0.2119	b.84.1.1	65222
1y8oB	128	0.3921	b.84.1.1	122759
3cdxA	354	0.4106		
1k8mA	93	0.4990	b.84.1.1	68314
1zkoA	136	0.6123		
1htp	131	0.6894		
1qjoA	80	0.7589	b.84.1.1	28229
1bdoA	80	1.064	b.84.1.1	28214
2evbA	74	1.123		
1hpcA	131	1.811	b.84.1.1	28221
1bdo	80	4.797		
1pfzA	380	5.980	b.50.1.2	26881
1tq5A	242	7.593	b.82.1.12	119311
2qj8A	332	8.459		
1ge8A	249	11.04	d.131.1.2,d.131.1.2	41398,41399
2d1uA	104	13.44		
1p42A	270	14.74	d.14.1.7,d.14.1.7	87754,87755
2cdpA	160	18.30		
2nwhA	317	20.28		
1y2qA	143	21.65		
2pwwA	127	21.90		
2d73A	738	23.02		
2dc4A	165	23.64		
1at0	145	25.66		
1iz5A	249	26.40	d.131.1.2,d.131.1.2	83834,83835
2bodX	286	30.33	c.6.1.1	128909
2debA	653	31.65		
2hrvA	142	38.06	b.47.1.4	26429
2q2bA	179	40.13		
2f9hA	129	41.76	b.161.1.1	133162
2aukA	190	47.50		
2jrrA	67	48.28		
1wpgA	994	48.30	b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1	114806,114807,114808,114809
2dqsA	995	51.47		
2bogX	286	54.60		
2rijA	387	55.62		
2omkA	231	58.24		
1vqoA	240	58.95	b.34.5.3,b.40.4.5	120361,120362
1hw7A	255	60.64	d.193.1.1	61297
1jer	138	61.29		
2cavA	445	66.58	b.82.1.2,b.82.1.2	28094,28095
2j58A	359	68.31		
2i7nA	360	70.88		
2yueA	168	71.56		
1uxxX	133	72.57	b.18.1.10	100169
2blrA	206	74.25	b.25.1.1	128741
1v1aA	309	74.92	c.72.1.1	100249
2ea7A	434	76.90		
2phcB	225	77.16		
1a0iA	348	77.21	b.40.4.6,d.142.2.1	25363,41577
2qv8A	159	80.92		
2gaeA	346	82.39		
1i7pA	274	83.61	b.43.4.2,c.25.1.1	66048,66049
1mzyA	333	88.00	b.6.1.3,b.6.1.3	103848,103849
3bw1A	96	88.60