# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3cdxA	354	0.999		
1gjxA	81	3.474	b.84.1.1	65222
2qj8A	332	7.022		
1pfzA	380	8.064	b.50.1.2	26881
1qjoA	80	8.916	b.84.1.1	28229
1bdoA	80	11.54	b.84.1.1	28214
2eveA	157	13.66	b.122.1.8	132427
1ge8A	249	15.14	d.131.1.2,d.131.1.2	41398,41399
1iz5A	249	17.55	d.131.1.2,d.131.1.2	83834,83835
1a8d	452	17.61		
1ghj	79	19.53		
1y8oB	128	21.72	b.84.1.1	122759
1k8mA	93	24.11	b.84.1.1	68314
2evbA	74	27.88		
1zkoA	136	30.08		
2anrA	178	36.60		
1htp	131	49.40		
1bdo	80	51.95		
2hrvA	142	56.51	b.47.1.4	26429
1diwA	441	59.19	b.29.1.6,b.42.4.2	24264,25609
1t8tA	271	61.79	c.37.1.5	106685
1ykdA	398	61.89		
3blnA	143	73.47		
1at0	145	75.77		
1tq5A	242	79.05	b.82.1.12	119311
1hpcA	131	79.77	b.84.1.1	28221
3crxA	343	83.45	a.60.9.1,d.163.1.1	18101,42161
1lxyA	409	84.10	d.126.1.4	91154
2ar1A	172	84.93	b.122.1.8	127187