# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1gjxA	81	0.8041	b.84.1.1	65222
1ghj	79	1.199		
3cdxA	354	2.411		
1k8mA	93	2.565	b.84.1.1	68314
1y8oB	128	2.601	b.84.1.1	122759
2qj8A	332	2.929		
1qjoA	80	3.650	b.84.1.1	28229
1pfzA	380	4.634	b.50.1.2	26881
2evbA	74	4.750		
1ge8A	249	6.546	d.131.1.2,d.131.1.2	41398,41399
2hrvA	142	7.467	b.47.1.4	26429
1bdoA	80	15.63	b.84.1.1	28214
1htp	131	18.18		
1zkoA	136	18.97		
1bdo	80	20.26		
2rijA	387	21.79		
1f0xA	571	25.33	d.58.32.2,d.145.1.1	39483,41746
2vhfA	374	32.70		
1vbkA	307	33.46	c.26.2.6,d.308.1.1	119957,119958
2a5sA	284	37.55	c.94.1.1	126178
1iz5A	249	44.71	d.131.1.2,d.131.1.2	83834,83835
1hpcA	131	52.73	b.84.1.1	28221
1t3kA	152	52.87	c.46.1.1	106357
2durA	253	53.79		
1qa7A	217	53.84	b.47.1.4	26425
1bxsA	501	54.95	c.82.1.1	35357
1jer	138	61.06		
1vqoA	240	63.64	b.34.5.3,b.40.4.5	120361,120362
3c6qA	311	69.00		
2qy1A	330	69.45		
2obaA	138	70.22		
2g64A	140	70.55	d.96.1.2	134694
2icsA	379	70.71	b.92.1.8,c.1.9.14	137241,137242
1o04A	500	71.55	c.82.1.1	86508
1p42A	270	72.45	d.14.1.7,d.14.1.7	87754,87755
1t5oA	351	72.70	c.124.1.5	106459
1bhuA	102	77.91	b.11.1.3	23631
1aunA	208	78.18	b.25.1.1	23900
1tq5A	242	78.67	b.82.1.12	119311
2dytA	312	80.36		
1mzyA	333	88.08	b.6.1.3,b.6.1.3	103848,103849