# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1y8oB 128 0.4210 b.84.1.1 122759 3cdxA 354 6.174 2cy5A 140 8.864 b.55.1.2 131018 1l1nA 183 9.806 b.47.1.4 73476 2qj8A 332 10.08 1qh5A 260 10.79 d.157.1.2 42057 1yu3A 381 11.12 b.163.1.1,d.169.1.8 124031,124032 2evbA 74 11.18 1yliA 153 12.71 d.38.1.1 123651 1suuA 312 12.88 b.68.10.1 99006 2qtpA 194 13.02 3b7kA 333 13.11 3c96A 415 13.40 1yu1A 381 13.91 b.163.1.1,d.169.1.8 124027,124028 1zkoA 136 14.21 1qjoA 80 14.25 b.84.1.1 28229 1yu4A 381 15.02 b.163.1.1,d.169.1.8 124033,124034 1q9iA 571 15.45 a.138.1.3,c.3.1.4,d.168.1.1 96273,96274,96275 1yu2A 381 15.70 b.163.1.1,d.169.1.8 124029,124030 2hljA 157 15.84 d.38.1.1 136570 3bjkA 153 17.25 1p2hA 571 18.58 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 2pa5A 314 20.84 2hgsA 474 20.93 c.30.1.4,d.142.1.6 31722,75997 1jkgA 140 23.67 d.17.4.2 66795 1bdo 80 24.60 1i9zA 347 27.56 d.151.1.2 62102 3ck2A 176 28.07 1eq6A 189 28.33 d.107.1.1 40796 1l1jA 239 29.32 b.47.1.1 84516 1jhsA 188 29.66 d.107.1.1 84172 1lckA 175 29.75 b.34.2.1,d.93.1.1 24552,40421 1rpmA 278 30.13 c.45.1.2 32679 1xvqA 175 31.14 c.47.1.10 116094 2qazA 128 31.36 2eisA 133 33.85 2fa8A 105 35.95 c.47.1.23 133185 1htp 131 36.69 2bzlA 325 37.71 1xo7A 166 38.41 b.62.1.1 115694 1wchA 315 38.87 c.45.1.2 114508 1uf3A 228 39.09 d.159.1.6 99317 2olnA 397 39.18 1ghj 79 39.49 1tp9A 162 39.92 c.47.1.10 119306 2e3nA 255 39.98 1t6lA 290 45.25 d.131.1.2,d.131.1.2 106574,106575 2i75A 320 46.13 2pimA 141 46.69 2b49A 287 47.23 2hy1A 280 48.70 1e42A 258 49.58 b.1.10.1,d.105.1.1 22316,40792 1y0pA 571 49.78 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 1nr0A 611 50.30 b.69.4.1,b.69.4.1 86078,86079 1fl2A 310 52.19 c.3.1.5,c.3.1.5 59869,59870 1i9yA 347 52.54 d.151.1.2 62101 1mkaA 171 53.73 d.38.1.2 38543 1nekA 588 54.68 a.7.3.1,c.3.1.4,d.168.1.1 80426,80427,80428 2cx4A 164 55.67 c.47.1.10 130973 2v1oA 151 57.62 1ig3A 263 57.69 b.82.6.1,c.100.1.1 62358,62359 2fyqA 194 59.62 2h14A 317 60.37 1bdoA 80 61.57 b.84.1.1 28214 1g7fA 298 63.15 c.45.1.2 60330 1yu0A 381 63.28 b.163.1.1,d.169.1.8 124025,124026 1frvB 536 64.26 e.18.1.1 43296 1erjA 393 65.96 b.69.4.1 27660 3byqA 193 67.14 2oc3A 303 68.39 1k8mA 93 70.86 b.84.1.1 68314 1v2bA 177 72.91 d.107.1.2 108279 2bs3A 656 73.31 a.7.3.1,c.3.1.4,d.168.1.1 129042,129043,129044 1jk7A 323 73.58 d.159.1.3 63144 2ixsA 323 73.91 1qd9A 124 75.25 d.79.1.1 39758 1v84A 253 76.02 c.68.1.7 108419 1z2zA 446 77.42 1h2kA 349 77.43 b.82.2.6 76572 2omkA 231 80.25 1hpcA 131 81.64 b.84.1.1 28221 1qo8A 566 84.99 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 2z2nA 299 85.51 2ostA 151 86.09 2p18A 311 88.16