(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.cse.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0397 hypothetical protein MMP0046, Methanococcus maripaludis s2, 150 residues
                     10              20        30                   40 
                     |               |         |                    | 
   1 ...M.KIPKIYVE...G.ELNDGDRV...A..IEKDGNAIIFLEKD..E...EYSG.....N.GK
   2 ...M.KIPKIYVE...G.ELNDGDRV...A..IEKDGNAIIFLEKD..E...EYSG.....N.GK
   3 ...M.KIPKIYVE...G.ELNDGDRV...A..IEKDGNAIIFLEEN..E...EYSG.....N.GK
   4 ...M.KIPKIYVE...G.ELNDGDRV...A..IEKDGNAIIFLEEN..E...EYSG.....N.GK
   5 ...M.KIPKIYVE...G.ELNDGERV...A..IENNGKIIIFLEEN..E...EYSG.....N.GK
   6 ...M.KIPKIYIE...G.ELNDNNKV...V..IENEGKKIIFLEKE..D...EYFG.....D.GK
   7 ggkMgRLPQLFVEverE.ECLEGDKVkyeC..IIIQDNIEVKLKEG..E...RVPDfinieR.AK
   8 ...MsRLPQLYVEvpkE.ECLEGRKVkheC..IIIQDNLEVKLGEG..D...EIPDfvdldR.AK
   9 ...MsRTPQLYVEvpkE.ECLEGRRVkhdC..IVIQDNIEVRLREG..E...EVPEfiqvdK.AK
  10 mniM.RIPRLYVE...NaEKHEGRKV...V..IENGGKVIKFLDKD..E...EYEG.....D.GK
  11 ...MeKLPKLYVEttqE.ECVKDGKTlaeC..VVIMGNVEVWLKEN..E...ELPDfidpsR.AK
  12 ...M.KIPKLYVE...N.NIFEDNEP...CekIAVSEKEIIFLDSD..EvvdNYKN.....T.HK
  13 ...M.ALPRIYVEt..D.EVPESGKI...L..LTDPEFEVIVRSRElaE...KIAEel...D.EP
  14 mekY.RYPEVFVE...G.--VESDKY...V..LEINEHYILVLTKEdlE...KYVN.....Y.KR
  15 rspY.HIPRIYIE...G.-IGSDEYL...E..LVDSTARRTDRCSG..R...RCFG.....-.-K
  16 pedY.RFPELYLE...G.YV--SERA...I..WVDEEEGKYYRRPV..E...GLKR.....Y.GL
  17 mdpY.KFPRLFVE...G.--KEGEEY...A..VV-EGDEVVFVK--..E...KVPG.....AlGK


              50          60             70           80        90     
              |           |              |            |         |     
   1 LLY.QVIYDDLAKYMSL..DTLK..KDVLIQYP...DKH.TL..TYLKAGTKLISVPAEGYKVYP
   2 LLY.QVIYDDLAKYMSL..DTLK..KDVLIQYP...DKH.TF..TYLKAGTKLISVPAEGYKVYP
   3 LLY.RVIYDDLAKYLSL..DELK..KDVLIQYP...DKH.TF..TYLKAGTKLVSVVAEGYEVYP
   4 LLY.QVIYDDLAKYLSL..DKLK..KDVLIQYP...DKH.TF..TYLKAGIKLVSVVAEGYEVYP
   5 LLY.TVIYDDLVKYLSL..NKLK..KDVLIQYP...DKH.TV..TYLKTGTELISVVAEGYEVYP
   6 VLY.QVIYDDLSKYLVL..NKLK..KDIFIKFP...DNR.TF..SYIKKGTELILVPAEGYKVYP
   7 FLA.KEIYDRFHFYVDQyeHKMR..VDAIIVYP...DRR.TK..MYLRKGDELMLLPVEGYVVTL
   8 FLA.KEIYDRFHFYVDQyeHRMK..VDAIIVYP...DRR.TK..IYLKKGDELLLLPVEGYVVTL
   9 FLA.KEIYDRFHFYVDHyeHRMK..VDAIIVYP...DRR.TK..IYLKKGDELLLLPVEGYVVTL
  10 VLY.QVIYDDFDNYVLM..GTVT..KDMIIEYEvg.GVR.QI..TYIKKGTKLLEIPAEGYKVYP
  11 FLK.REVYDRFYLYVDR..TEQKmtADVILVLP...DGR.TR..IYLKKGDELMILPVEGFTKTL
  12 ILY.KVRYDDIRSYIDN..DVLK..KDIFVKYP...GNH.TF..THIKAGTYITCVLADSKTTYP
  13 IFYeQVVYEEARSVFDV..PEAKvtRHVVIEPV...DRR.SL..VFLKPGDRVYQIPVEGYVVTP
  14 VFG.HIIYEHIINYIDLv.KPAT..KKAFIVIPeysGEK.EMngFLIDENKKLCLIEVKGIQPYV
  15 AIY.GTLLDEIADLLAK..KATR..SFIVVLPP...DYR.KG..LLVEAGSYLEPVPLEGMRVVI
  16 AVY.EHAIKEAIDLVG-..SRVS..RGFVVVIP...WKGmRG..LMLREGTRVKLVEAAGVQVSH
  17 VPY.EIPLDEIVDKLK-..EEAK..VTFLIHLP...NED.KA..ILVPKGSKVKLFKVSHVKVGV


        100       110       120       130              140           15
         |         |         |         |                |             
   1 IMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTV.IFMN.EI.PS....ERA..N.YVFYMLE.
   2 IMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTV.IFMN.EI.PS....ERA..N.YVFYMLE.
   3 IMDFGFRVLKGYRLATLKSKKGDLRYANSPISGTV.IFMN.EI.PS....ERA..N.YVFYMLE.
   4 IMDFGFRVLKGYRLATLKSKKGDLRYVNSPVSGTV.IFMN.EV.PS....ERA..N.YVFYMIE.
   5 IMDFGFRVLKGYRLATLKSKKGDLRYVNSPVSGTV.IFMN.EI.PS....ERA..N.YVFYMLE.
   6 ILDFGYRVLKGYRLAGLESKKGDIRYVNSPVNGTV.VFMN.EI.PS....ERP..N.YVFYILE.
   7 IADVGNRVRKGDPFAAITTRKGEVHYLKPPKPGTV.VYID.EF.-T....NRP..H.YVYYILP.
   8 IADVGNRVRKGDAFAAVTTRKGEVHYLKPPRPGTV.VYID.EF.-T....NRP..H.YVYYILP.
   9 IADVGNRVRKGDAFAAVTTRKGEVHYLKPPKPGTV.VYID.EF.-T....NRP..H.YIYYILP.
  10 IVDFGCRILGGHRIAALQSRKGDIRFVNTPVNGIV.LFLK.EV.PA....KRE..N.YVFYILP.
  11 IANVGNRVRTGDAFAAVTTRKGEVHYLKPPKTGTV.VFID.EI.-T....NRP..H.YLYYILP.
  12 ILDAGSVVLRDGILATLKSNKGVIRYLKSPVSGTV.FFMN.EIfEG....NNS..I.YLFAIVE.
  13 IADVGDRLRKGDPLAAVTTRSGNVRYVEAPQDCLV.VYVC.EQ.PAirtqRRP..N.YEYYIAPt
  14 FPREGDEIEERDKVAYIITGKGEVRTIRSPCKGVV.LLVI.NF.PW....EKP..EkYVLAVVN.
  15 HVCEGDRVEEGSTLGFIATRKFEVRHIRSHVEGVV.VYIY.SS.PE....GPPdrN.IVF-IAP.
  16 YSLEGTRVGERSVLSYVLTGKGETRTLRAGVEGVVaIILT.DH.NR....QPP..A.YIYVIAD.
  17 TVKEGDELEEGDTYAYGLTGKGEVRRFRSIVKGKV.VMVHwEP.YG....GRD..D.YHVLVVP.


      0   
     |   
   1 E...
   2 E...
   3 E...
   4 E...
   5 E...
   6 E...
   7 Ee..
   8 El..
   9 Ef..
  10 Eeei
  11 Ee..
  12 Nsev
  13 E...
  14 Kndi
  15 Eevv
  16 Ehdv
  17 Egak