# List of top-scoring protein chains for T0397.t06-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2czlA	272	5.612	c.94.1.1	131055
1brwA	433	7.298	a.46.2.1,c.27.1.1,d.41.3.1	17764,31628,38626
1rpxA	230	14.05	c.1.2.2	28536
2gaiA	633	18.53		
2dneA	108	18.73		
1labA	80	18.97	b.84.1.1	28226
1mk4A	157	20.12	d.108.1.1	84979
1z9bA	135	28.64		
1hpcA	131	30.28	b.84.1.1	28221
1tqjA	230	30.82	c.1.2.2	107228
1efhA	292	35.15	c.37.1.5	31948
1wzuA	300	42.43	c.145.1.1	121528
1z6hA	72	45.75		
1ov4A	293	46.96	c.37.1.5	93581
1bhuA	102	47.66	b.11.1.3	23631
1zkoA	136	48.10		
2edgA	130	54.25		
1lmeA	176	54.69	d.167.1.1	84629
1j99A	293	61.40	c.37.1.5	71618
1seiA	130	61.79	d.140.1.1	41463
1s1iB	253	62.59	i.1.1.1	105176
1orvA	728	62.72	b.70.3.1,c.69.1.24	87354,87355
1m9mA	415	68.08	d.174.1.1	74595
3nosA	427	69.07	d.174.1.1	42520
2dyiA	162	69.47		
1pszA	303	70.05	c.92.2.2	35600
2bazA	142	77.08		
1za7A	165	77.66		
3bjoA	103	82.90		
1kkhA	317	84.20	d.14.1.5,d.58.26.3	72645,72646
1y8oB	128	87.57	b.84.1.1	122759
1fycA	106	87.81	b.84.1.1	28230