# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1zkoA	136	0.7192		
1hpcA	131	0.9847	b.84.1.1	28221
2evbA	74	1.141		
1y8oB	128	1.961	b.84.1.1	122759
1vqoA	240	4.601	b.34.5.3,b.40.4.5	120361,120362
1qksA	567	5.023	a.3.1.2,b.70.2.1	15951,27710
2ihoA	293	5.097		
2odiA	238	8.051		
2ajrA	331	8.462	c.72.1.1	126892
1tc1A	220	9.176	c.61.1.1	34083
3cdxA	354	9.708		
2hqqA	298	10.27		
2fv7A	331	10.83	c.72.1.1	134197
1rkdA	309	13.62	c.72.1.1	34928
2ckkA	127	13.91		
1ftpA	133	16.85	b.60.1.2	27199
2dcnA	311	19.32	c.72.1.1	131374
2q4zA	312	19.78		
1bdoA	80	20.91	b.84.1.1	28214
1uqwA	509	22.04	c.94.1.1	99799
1at0A	145	23.13	b.86.1.1	28374
1hw7A	255	23.60	d.193.1.1	61297
2qhpA	296	23.95		
2hrvA	142	24.93	b.47.1.4	26429
1jofA	365	26.54	b.69.10.1	71775
1kkhA	317	27.78	d.14.1.5,d.58.26.3	72645,72646
2qj8A	332	27.87		
2halA	212	29.40	b.47.1.4	136289
1bdo	80	30.89		
1rkd	309	30.91		
1vf7A	369	31.35	f.46.1.1	108557
1gxcA	149	31.41	b.26.1.2	70687
2afbA	351	33.85	c.72.1.1	126674
2b5nA	323	41.06		
2brxA	244	41.57	c.73.1.3	129028
2qcvA	332	41.72		
2e63A	170	41.84		
2qf7A	1165	43.17		
1lfoA	127	43.88	b.60.1.2	27223
1zud2	66	45.82		
1dpeA	507	47.95	c.94.1.1	35799
1jxhA	288	48.00	c.72.1.2	67415
2gu1A	361	49.46		
2v78A	313	53.43		
2r44A	331	53.43		
2go3A	267	56.13	d.14.1.7,d.14.1.7	135422,135423
1ywmA	200	59.18		
2cxvA	219	61.98	b.47.1.4	131012
1tp9A	162	62.93	c.47.1.10	119306
1clcA	639	64.82	a.102.1.2,b.1.18.2	18835,21872
1p42A	270	65.36	d.14.1.7,d.14.1.7	87754,87755
2abqA	306	66.77	c.72.1.1	126528
1xocA	520	67.18	c.94.1.1	122201
1ryiA	382	67.21	c.3.1.2,d.16.1.3	118813,118814
2nwhA	317	68.06		
2gnrA	145	71.54		
1t71A	281	72.48	d.159.1.9	112283
2dqsA	995	73.90		
1zruA	264	76.13	b.21.1.3,b.108.1.4,b.163.1.2	125560,125561,125562
1i0lA	221	78.14	c.61.1.1	71096
1n1tA	641	78.41	b.29.1.15,b.68.1.1	79821,79822
1fmtA	314	78.72	b.46.1.1,c.65.1.1	25758,34174
2h62A	114	79.09	g.17.1.2	136177
3bevB	99	79.10		
1si7A	369	79.53	d.265.1.4	98883
1wp5A	323	83.45	b.68.10.1	114780
1jetA	517	85.13	c.94.1.1	35718
2pz4A	239	86.44