# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2evbA	74	0.2325		
1zkoA	136	0.5849		
1y8oB	128	0.6086	b.84.1.1	122759
1hpcA	131	1.502	b.84.1.1	28221
3cdxA	354	4.471		
2qf7A	1165	5.010		
1qksA	567	5.192	a.3.1.2,b.70.2.1	15951,27710
1bdoA	80	6.478	b.84.1.1	28214
2hqqA	298	6.756		
1bdo	80	7.036		
2ajrA	331	7.852	c.72.1.1	126892
2odiA	238	9.457		
1tc1A	220	9.821	c.61.1.1	34083
2e63A	170	10.26		
2ihoA	293	11.18		
1kkhA	317	11.54	d.14.1.5,d.58.26.3	72645,72646
2b5nA	323	11.92		
2q4zA	312	13.03		
1jofA	365	15.47	b.69.10.1	71775
2fv7A	331	18.80	c.72.1.1	134197
2qj8A	332	19.70		
1vqoA	240	19.72	b.34.5.3,b.40.4.5	120361,120362
2ckkA	127	21.10		
2f2fA	222	24.21	b.42.2.1	132810
2hrvA	142	25.21	b.47.1.4	26429
2nwhA	317	28.03		
2dcnA	311	28.25	c.72.1.1	131374
2qhpA	296	33.53		
2omkA	231	33.97		
1y7mA	164	38.05	b.160.1.1,d.7.1.1	122696,122697
1rkdA	309	38.79	c.72.1.1	34928
1zu0A	529	39.48		
1wp5A	323	39.79	b.68.10.1	114780
2qcvA	332	41.39		
2d1uA	104	42.50		
1at0A	145	43.40	b.86.1.1	28374
2r44A	331	44.43		
2gnrA	145	45.16		
1uqwA	509	46.97	c.94.1.1	99799
1vf7A	369	50.15	f.46.1.1	108557
1ywmA	200	52.15		
1p6oA	161	52.31	c.97.1.2	94185
1clcA	639	53.02	a.102.1.2,b.1.18.2	18835,21872
1lr5A	163	54.21	b.82.1.2	74215
1rkd	309	54.73		
2halA	212	55.49	b.47.1.4	136289
1twuA	139	58.00	d.32.1.8	107413
1rwzA	245	59.27	d.131.1.2,d.131.1.2	98005,98006
2h62A	114	59.85	g.17.1.2	136177
1ftpA	133	59.97	b.60.1.2	27199
2v78A	313	62.51		
2blnA	305	62.79	b.46.1.1,c.65.1.1	128734,128735
1hw7A	255	62.92	d.193.1.1	61297
1ryiA	382	65.69	c.3.1.2,d.16.1.3	118813,118814
2gu1A	361	65.82		
1fmtA	314	66.21	b.46.1.1,c.65.1.1	25758,34174
2afbA	351	66.74	c.72.1.1	126674
2ej8A	160	66.85		
2v1oA	151	67.35		
1gxcA	149	68.03	b.26.1.2	70687
1zud2	66	68.26		
1zvtA	256	68.85		
2dqsA	995	70.07		
1x31B	404	70.49		
1jxhA	288	71.21	c.72.1.2	67415
1lxiA	139	71.33	g.17.1.2	84735
3bjkA	153	72.04		
2vbuA	136	75.28		
1ub0A	258	76.36	c.72.1.2	88394
2z00A	426	77.54		
1si7A	369	77.59	d.265.1.4	98883
1lfoA	127	79.88	b.60.1.2	27223
2gvhA	288	81.81	d.38.1.1,d.38.1.1	135776,135777
1xocA	520	85.82	c.94.1.1	122201
2hlzA	312	87.83