# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2evbA 74 0.1959 1y8oB 128 0.3461 b.84.1.1 122759 1lfoA 127 0.5725 b.60.1.2 27223 1zkoA 136 0.5923 1hpcA 131 0.6563 b.84.1.1 28221 2ihoA 293 1.675 1bdoA 80 3.963 b.84.1.1 28214 1bdo 80 4.219 1ftpA 133 4.318 b.60.1.2 27199 3cdxA 354 5.318 2e63A 170 5.775 1gxcA 149 6.178 b.26.1.2 70687 2odiA 238 6.576 1vqoA 240 7.630 b.34.5.3,b.40.4.5 120361,120362 1fmtA 314 9.635 b.46.1.1,c.65.1.1 25758,34174 2qj8A 332 10.34 1bypA 99 12.10 b.6.1.1 22858 2ajrA 331 12.53 c.72.1.1 126892 1j1lA 290 14.19 b.82.1.12 90766 2gbaA 105 17.05 1zjcA 418 17.57 e.60.1.1 125147 1qksA 567 22.26 a.3.1.2,b.70.2.1 15951,27710 1jofA 365 22.26 b.69.10.1 71775 2nwhA 317 24.08 2pltA 98 24.71 b.6.1.1 22862 1zxfA 155 25.57 d.129.3.5 125771 2zbwA 335 25.74 1at0A 145 27.05 b.86.1.1 28374 2gu1A 361 27.25 2fv7A 331 28.55 c.72.1.1 134197 1bu6O 501 29.09 c.55.1.4,c.55.1.4 33499,33500 2aujD 309 29.50 1p42A 270 30.87 d.14.1.7,d.14.1.7 87754,87755 1tc1A 220 31.46 c.61.1.1 34083 1gp6A 356 31.95 b.82.2.1 65441 1iuzA 98 32.18 b.6.1.1 22861 2p17A 277 32.42 1jyoA 130 32.84 d.198.1.1 67483 2omkA 231 33.09 1ywmA 200 33.35 1vyfA 135 33.91 b.60.1.2 108902 2go3A 267 35.49 d.14.1.7,d.14.1.7 135422,135423 1s7mA 174 37.06 b.144.1.1 98649 2q4zA 312 37.68 1genA 218 38.23 b.66.1.1 27536 2f2fA 222 40.11 b.42.2.1 132810 2g7iA 125 40.42 1tq5A 242 41.36 b.82.1.12 119311 2qf7A 1165 44.87 2cirA 297 44.96 2yueA 168 45.20 2eixA 243 45.46 2h5uA 499 47.18 1rkdA 309 48.03 c.72.1.1 34928 1ig0A 319 54.07 b.82.6.1,c.100.1.1 62354,62355 2ehjA 208 55.06 1s3eA 520 57.38 c.3.1.2,d.16.1.5 98426,98427 2eifA 136 58.42 b.34.5.2,b.40.4.5 24607,25339 1uv4A 293 59.55 b.67.2.1 119705 1w9yA 319 61.58 b.82.2.1 120801 1t71A 281 62.63 d.159.1.9 112283 2debA 653 63.39 1jxgA 100 63.80 b.6.1.1 67413 2j6aA 141 65.84 2d73A 738 66.60 1zruA 264 67.38 b.21.1.3,b.108.1.4,b.163.1.2 125560,125561,125562 1gvhA 396 67.63 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1zud2 66 67.96 2pqvA 154 68.13 2hsiA 282 68.54 2ccvA 101 68.93 b.154.1.1 130258 2qo4A 126 71.26 2gagB 405 71.54 2p84A 145 72.86 1lr5A 163 73.57 b.82.1.2 74215 1za7A 165 73.61 2brxA 244 74.01 c.73.1.3 129028 1wp5A 323 74.42 b.68.10.1 114780 1k0wA 231 74.51 c.74.1.1 77220 2pkfA 334 75.42 2hqqA 298 75.47 2ov0A 105 75.66 1v47A 349 75.69 b.122.1.3,c.26.1.5 100292,100293 2qf4A 172 76.16 1vqoQ 96 76.48 b.34.5.1 120378 2hgsA 474 78.59 c.30.1.4,d.142.1.6 31722,75997 2ckkA 127 79.09 2fx7H 228 79.87 b.1.1.1,b.1.1.2 134276,134277 2j58A 359 80.31 2vesA 299 80.43 1rkd 309 80.86 1a0iA 348 81.00 b.40.4.6,d.142.2.1 25363,41577 1c7sA 858 82.78 b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1rc6A 261 83.18 b.82.1.11 97287 1y56A 493 83.46 1pkhA 204 84.24 b.85.4.1 94832 1ts9A 102 84.49 b.137.1.1 112618 2cu3A 64 84.64 1seiA 130 84.67 d.140.1.1 41463 1at0 145 84.86 1m2tB 263 85.54 b.42.2.1,b.42.2.1 84762,84763 1wxrA 1048 87.13 1amuA 563 87.48 e.23.1.1 43351 1fyxA 149 87.93 c.23.2.1 31128 2d1zA 436 89.02 1gprA 162 89.23 b.84.3.1 28267 1gpr 162 89.49