# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2evbA	74	2.037		
1y8oB	128	2.200	b.84.1.1	122759
1zkoA	136	2.747		
1hpcA	131	3.733	b.84.1.1	28221
1qksA	567	6.209	a.3.1.2,b.70.2.1	15951,27710
2odiA	238	6.892		
2ajrA	331	8.274	c.72.1.1	126892
2ihoA	293	8.762		
2hqqA	298	10.35		
1vqoA	240	10.68	b.34.5.3,b.40.4.5	120361,120362
1tc1A	220	13.88	c.61.1.1	34083
1jofA	365	14.15	b.69.10.1	71775
1lfoA	127	19.67	b.60.1.2	27223
1uqwA	509	22.51	c.94.1.1	99799
1rkdA	309	22.70	c.72.1.1	34928
1bdoA	80	23.31	b.84.1.1	28214
1zj6A	187	24.85	c.37.1.8	125145
1bdo	80	26.38		
1v8bA	479	27.35	c.2.1.4,c.23.12.3	113564,113565
3cdxA	354	28.27		
2brxA	244	29.65	c.73.1.3	129028
1ftpA	133	29.79	b.60.1.2	27199
1dpeA	507	32.49	c.94.1.1	35799
2qj8A	332	34.15		
2qhpA	296	36.04		
1si7A	369	37.46	d.265.1.4	98883
1zxfA	155	43.08	d.129.3.5	125771
2hrvA	142	43.13	b.47.1.4	26429
2ckkA	127	44.09		
2b5nA	323	45.53		
2dcnA	311	45.84	c.72.1.1	131374
2z00A	426	46.41		
2htdA	140	51.71		
1gxcA	149	54.20	b.26.1.2	70687
1rkd	309	54.39		
3c0dA	119	54.82		
1jetA	517	57.15	c.94.1.1	35718
1kkhA	317	57.84	d.14.1.5,d.58.26.3	72645,72646
2fv7A	331	58.79	c.72.1.1	134197
2qcvA	332	60.01		
1genA	218	61.39	b.66.1.1	27536
2q4zA	312	61.72		
1ywmA	200	62.96		
2nwhA	317	63.06		
1clcA	639	63.74	a.102.1.2,b.1.18.2	18835,21872
1i0lA	221	64.96	c.61.1.1	71096
1i52A	236	67.08	c.68.1.13	61767
1dqpA	230	68.58	c.61.1.1	34069
2pqvA	154	73.95		
1jxhA	288	74.39	c.72.1.2	67415
1ekqA	272	76.15	c.72.1.2	34941
2a9gA	418	79.36	d.126.1.4	126435
2v78A	313	79.55		
1hw7A	255	81.44	d.193.1.1	61297
2d1uA	104	86.34		
2e63A	170	86.52		
1a5tA	334	89.01	a.80.1.1,c.37.1.20	18450,32423
1k20A	310	89.92	c.107.1.1	68027