# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2evbA	74	0.8789		
1y8oB	128	2.338	b.84.1.1	122759
1zkoA	136	2.853		
1hpcA	131	3.734	b.84.1.1	28221
2odiA	238	8.380		
1tc1A	220	9.140	c.61.1.1	34083
2ihoA	293	10.26		
2ajrA	331	10.33	c.72.1.1	126892
1bdo	80	13.86		
1qksA	567	14.00	a.3.1.2,b.70.2.1	15951,27710
1bdoA	80	14.19	b.84.1.1	28214
2qf7A	1165	15.79		
2hqqA	298	17.99		
1v8bA	479	21.21	c.2.1.4,c.23.12.3	113564,113565
1uqwA	509	21.67	c.94.1.1	99799
1vqoA	240	22.03	b.34.5.3,b.40.4.5	120361,120362
1lfoA	127	23.45	b.60.1.2	27223
1dpeA	507	23.61	c.94.1.1	35799
2qj8A	332	24.23		
1jofA	365	26.10	b.69.10.1	71775
1kkhA	317	27.29	d.14.1.5,d.58.26.3	72645,72646
2q4zA	312	29.87		
3cdxA	354	31.73		
1i52A	236	32.32	c.68.1.13	61767
1zj6A	187	40.21	c.37.1.8	125145
2ckkA	127	41.00		
2brxA	244	41.11	c.73.1.3	129028
1clcA	639	42.31	a.102.1.2,b.1.18.2	18835,21872
1ftpA	133	42.49	b.60.1.2	27199
2qhpA	296	43.22		
1rkdA	309	44.89	c.72.1.1	34928
1jetA	517	48.24	c.94.1.1	35718
1hw7A	255	49.75	d.193.1.1	61297
2dcnA	311	51.24	c.72.1.1	131374
1i0lA	221	53.11	c.61.1.1	71096
2hrvA	142	53.42	b.47.1.4	26429
1ywmA	200	54.21		
1ekqA	272	55.43	c.72.1.2	34941
1si7A	369	56.51	d.265.1.4	98883
2nwhA	317	62.32		
2v1oA	151	63.13		
2eixA	243	63.78		
1jxhA	288	66.00	c.72.1.2	67415
1fmtA	314	66.08	b.46.1.1,c.65.1.1	25758,34174
1dqpA	230	68.92	c.61.1.1	34069
1gxcA	149	74.24	b.26.1.2	70687
2go3A	267	77.82	d.14.1.7,d.14.1.7	135422,135423
1fyxA	149	79.85	c.23.2.1	31128
2gvhA	288	80.29	d.38.1.1,d.38.1.1	135776,135777
2e63A	170	81.18		
1zu0A	529	81.97		
2dqsA	995	85.08		
2z00A	426	85.91		
2fv7A	331	86.64	c.72.1.1	134197