# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2evbA	74	0.8961		
1y8oB	128	2.143	b.84.1.1	122759
1zkoA	136	3.041		
1hpcA	131	4.541	b.84.1.1	28221
2odiA	238	6.725		
2ajrA	331	9.719	c.72.1.1	126892
2ihoA	293	10.25		
1tc1A	220	12.07	c.61.1.1	34083
1qksA	567	12.85	a.3.1.2,b.70.2.1	15951,27710
2hqqA	298	14.59		
1bdoA	80	18.94	b.84.1.1	28214
1bdo	80	18.97		
2qf7A	1165	19.11		
1vqoA	240	19.46	b.34.5.3,b.40.4.5	120361,120362
1dpeA	507	22.76	c.94.1.1	35799
1i52A	236	25.90	c.68.1.13	61767
1uqwA	509	26.19	c.94.1.1	99799
1jofA	365	28.60	b.69.10.1	71775
1rkdA	309	30.33	c.72.1.1	34928
1v8bA	479	30.44	c.2.1.4,c.23.12.3	113564,113565
1zj6A	187	31.12	c.37.1.8	125145
1lfoA	127	31.69	b.60.1.2	27223
3cdxA	354	31.75		
2qj8A	332	32.02		
2ckkA	127	36.18		
1si7A	369	36.89	d.265.1.4	98883
2q4zA	312	38.29		
1kkhA	317	38.87	d.14.1.5,d.58.26.3	72645,72646
1jetA	517	42.85	c.94.1.1	35718
1ftpA	133	44.79	b.60.1.2	27199
2dcnA	311	45.76	c.72.1.1	131374
2brxA	244	45.93	c.73.1.3	129028
1clcA	639	48.46	a.102.1.2,b.1.18.2	18835,21872
2fv7A	331	48.73	c.72.1.1	134197
2nwhA	317	49.90		
2qhpA	296	55.45		
1hw7A	255	55.56	d.193.1.1	61297
2hrvA	142	56.46	b.47.1.4	26429
2z00A	426	56.73		
1jxhA	288	57.80	c.72.1.2	67415
1ywmA	200	58.32		
2eixA	243	63.41		
1gxcA	149	64.28	b.26.1.2	70687
1ekqA	272	66.17	c.72.1.2	34941
2e63A	170	68.70		
1rkd	309	69.90		
1i0lA	221	70.35	c.61.1.1	71096
1dqpA	230	77.07	c.61.1.1	34069
1k20A	310	78.76	c.107.1.1	68027
1zu0A	529	78.81		
2qcvA	332	78.83		
2htdA	140	80.15		
2afbA	351	84.86	c.72.1.1	126674
2v78A	313	88.51		
1zud2	66	89.17		
3c0dA	119	89.82