# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1zkoA	136	1.527		
2evbA	74	2.127		
1hpcA	131	2.170	b.84.1.1	28221
1y8oB	128	2.772	b.84.1.1	122759
2ajrA	331	7.649	c.72.1.1	126892
1tc1A	220	8.024	c.61.1.1	34083
2odiA	238	8.432		
2ihoA	293	8.494		
1qksA	567	9.116	a.3.1.2,b.70.2.1	15951,27710
1jofA	365	17.16	b.69.10.1	71775
1vqoA	240	17.26	b.34.5.3,b.40.4.5	120361,120362
1rkdA	309	18.91	c.72.1.1	34928
2e63A	170	21.96		
2fv7A	331	22.07	c.72.1.1	134197
2hqqA	298	22.49		
3cdxA	354	26.20		
2hrvA	142	26.90	b.47.1.4	26429
1uqwA	509	26.95	c.94.1.1	99799
1kkhA	317	30.58	d.14.1.5,d.58.26.3	72645,72646
1bdoA	80	32.93	b.84.1.1	28214
2nwhA	317	34.39		
1lfoA	127	34.44	b.60.1.2	27223
2z00A	426	35.56		
2dcnA	311	35.71	c.72.1.1	131374
1bdo	80	39.50		
2ckkA	127	40.00		
1v8bA	479	40.61	c.2.1.4,c.23.12.3	113564,113565
1dpeA	507	41.76	c.94.1.1	35799
1zxfA	155	42.25	d.129.3.5	125771
2q4zA	312	43.50		
2qj8A	332	43.51		
1rkd	309	44.08		
1ftpA	133	48.25	b.60.1.2	27199
2pyxA	526	51.03		
3c0dA	119	51.55		
2qf7A	1165	51.78		
1gxcA	149	54.40	b.26.1.2	70687
2qhpA	296	55.26		
2brxA	244	60.30	c.73.1.3	129028
1jetA	517	63.86	c.94.1.1	35718
2d73A	738	64.11		
1jxhA	288	64.37	c.72.1.2	67415
2go3A	267	67.20	d.14.1.7,d.14.1.7	135422,135423
1zud2	66	69.50		
2v78A	313	70.24		
1x31B	404	70.47		
2a9gA	418	71.97	d.126.1.4	126435
1ywmA	200	72.51		
1hw7A	255	75.25	d.193.1.1	61297
1p42A	270	78.07	d.14.1.7,d.14.1.7	87754,87755
2qo4A	126	79.27		
2qcvA	332	80.22		
1i0lA	221	81.81	c.61.1.1	71096
1genA	218	82.98	b.66.1.1	27536
1v47A	349	86.01	b.122.1.3,c.26.1.5	100292,100293
2qf4A	172	86.48		
2d1uA	104	87.83		
2halA	212	88.80	b.47.1.4	136289