# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2evbA 74 1.849 1y8oB 128 4.367 b.84.1.1 122759 1zkoA 136 5.028 2qf7A 1165 5.440 1tc1A 220 5.713 c.61.1.1 34083 1hpcA 131 5.999 b.84.1.1 28221 1lv7A 257 7.746 c.37.1.20 78232 2a6hD 1524 10.17 e.29.1.2 126265 1at0A 145 10.70 b.86.1.1 28374 1ypvA 313 11.60 2blnA 305 12.50 b.46.1.1,c.65.1.1 128734,128735 2qj8A 332 13.14 1dqpA 230 15.14 c.61.1.1 34069 1musA 477 15.66 c.55.3.4 79494 2bklA 695 16.61 1wp5A 323 16.64 b.68.10.1 114780 1qmeA 702 18.78 d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 2b8nA 429 19.28 c.118.1.1 128093 1xocA 520 21.11 c.94.1.1 122201 2hqqA 298 22.27 1vqoA 240 24.53 b.34.5.3,b.40.4.5 120361,120362 1i9zA 347 25.28 d.151.1.2 62102 1bdo 80 25.64 2brxA 244 26.06 c.73.1.3 129028 1jb0A 755 27.06 f.29.1.1 62820 1v33A 366 27.48 d.264.1.1 100278 2qf4A 172 27.59 1bdoA 80 29.24 b.84.1.1 28214 1v0eA 666 30.13 b.68.1.2,b.108.1.3 113466,113467 1mc0A 368 30.17 d.110.2.1,d.110.2.1 78937,78938 2fv7A 331 30.54 c.72.1.1 134197 3cdxA 354 30.89 2d0oA 610 31.19 c.8.6.1,c.55.1.6,c.55.1.6 131075,131076,131077 1op3H 225 33.91 b.1.1.1,b.1.1.2 87208,87209 1g38A 393 34.51 c.66.1.27,d.287.1.1 111567,111568 1at0 145 35.70 1x31B 404 36.13 1i0lA 221 37.57 c.61.1.1 71096 1uoyA 64 38.96 g.3.19.1 99709 1j0hA 588 41.64 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 2f02A 323 46.89 c.72.1.1 132649 1dpjA 329 47.72 b.50.1.2 26828 2pz4A 239 48.51 2hu5A 582 48.89 b.69.7.2,c.69.1.33 136763,136764 1hq0A 295 49.79 d.194.1.1 61122 2og2A 359 50.18 2v1oA 151 51.30 1m98A 317 51.52 a.175.1.1,d.17.4.6 78866,78867 3b9jC 763 53.70 1id0A 152 55.68 d.122.1.3 66111 1an9A 340 56.81 c.4.1.2,d.16.1.3 30617,37904 1qopB 396 58.38 c.79.1.1 35270 1g94A 448 60.01 b.71.1.1,c.1.8.1 65169,65170 1vh5A 148 60.76 d.38.1.5 100642 1gxcA 149 60.96 b.26.1.2 70687 2hi2A 158 61.02 2qedA 258 66.32 2hhiA 204 66.52 1ekjA 221 66.66 c.53.2.1 33364 1mi3A 322 68.20 c.1.7.1 91274 1uv4A 293 70.34 b.67.2.1 119705 2qkpA 151 70.44 1uqwA 509 71.71 c.94.1.1 99799 1zruA 264 71.88 b.21.1.3,b.108.1.4,b.163.1.2 125560,125561,125562 2uwiA 142 72.25 1tq5A 242 72.56 b.82.1.12 119311 1d5rA 324 73.11 b.7.1.1,c.45.1.1 23181,32697 2jo6A 113 73.18 1fn9A 365 73.74 d.196.1.1 59894 1h70A 255 74.66 d.126.1.3 60711 1vpmA 169 74.70 d.38.1.1 113967 1kkhA 317 75.28 d.14.1.5,d.58.26.3 72645,72646 1l6sA 323 75.32 c.1.10.3 73627 2exrA 524 76.31 1oewA 329 76.62 b.50.1.2 86924 1jxhA 288 76.89 c.72.1.2 67415 1mjnA 179 77.58 c.62.1.1 79210 2e63A 170 77.74 2gagB 405 79.69 2ds0A 130 80.31 1bf2 750 80.81 1hy7A 173 81.73 d.92.1.11 65957 2ea7A 434 85.33 2halA 212 86.43 b.47.1.4 136289 1rwzA 245 89.68 d.131.1.2,d.131.1.2 98005,98006