# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2evbA	74	1.055		
1zkoA	136	1.371		
1hpcA	131	1.557	b.84.1.1	28221
1y8oB	128	2.595	b.84.1.1	122759
2odiA	238	3.702		
1tc1A	220	4.779	c.61.1.1	34083
1qksA	567	7.222	a.3.1.2,b.70.2.1	15951,27710
2ihoA	293	8.249		
2ajrA	331	8.392	c.72.1.1	126892
2fv7A	331	14.96	c.72.1.1	134197
3cdxA	354	15.74		
1uqwA	509	17.25	c.94.1.1	99799
1vqoA	240	18.11	b.34.5.3,b.40.4.5	120361,120362
2hqqA	298	18.43		
1rkdA	309	19.21	c.72.1.1	34928
1kkhA	317	24.46	d.14.1.5,d.58.26.3	72645,72646
1jofA	365	25.65	b.69.10.1	71775
1dpeA	507	27.40	c.94.1.1	35799
2qf7A	1165	27.79		
2hrvA	142	28.45	b.47.1.4	26429
1hw7A	255	28.53	d.193.1.1	61297
2nwhA	317	30.00		
2qj8A	332	31.27		
1jetA	517	32.39	c.94.1.1	35718
1bdoA	80	33.35	b.84.1.1	28214
2dcnA	311	33.98	c.72.1.1	131374
2ckkA	127	34.48		
2e63A	170	34.72		
1fmtA	314	36.86	b.46.1.1,c.65.1.1	25758,34174
2q4zA	312	37.87		
2brxA	244	41.85	c.73.1.3	129028
1v8bA	479	42.94	c.2.1.4,c.23.12.3	113564,113565
1bdo	80	43.69		
2qhpA	296	44.05		
1rkd	309	47.52		
1i0lA	221	51.31	c.61.1.1	71096
2z00A	426	51.78		
1jxhA	288	53.41	c.72.1.2	67415
2go3A	267	53.48	d.14.1.7,d.14.1.7	135422,135423
1zud2	66	55.78		
1p42A	270	68.96	d.14.1.7,d.14.1.7	87754,87755
1ywmA	200	71.96		
2d1uA	104	74.09		
1x31B	404	76.17		
1ftpA	133	76.90	b.60.1.2	27199
1zu0A	529	79.27		
1ekqA	272	82.20	c.72.1.2	34941
1bhuA	102	82.96	b.11.1.3	23631
2afbA	351	83.71	c.72.1.1	126674
3bevB	99	83.92		
1wp5A	323	84.53	b.68.10.1	114780
1gxcA	149	85.85	b.26.1.2	70687