# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2evbA	74	2.372		
1zkoA	136	2.744		
1y8oB	128	2.871	b.84.1.1	122759
1hpcA	131	3.223	b.84.1.1	28221
1tc1A	220	6.546	c.61.1.1	34083
2odiA	238	7.074		
2ajrA	331	16.75	c.72.1.1	126892
2qf7A	1165	17.50		
1kkhA	317	17.98	d.14.1.5,d.58.26.3	72645,72646
2ihoA	293	20.26		
1qksA	567	22.45	a.3.1.2,b.70.2.1	15951,27710
1gxcA	149	27.47	b.26.1.2	70687
1uqwA	509	30.09	c.94.1.1	99799
1zu0A	529	31.15		
2z00A	426	34.27		
1dpeA	507	37.54	c.94.1.1	35799
1vqoA	240	38.89	b.34.5.3,b.40.4.5	120361,120362
1ftpA	133	39.38	b.60.1.2	27199
1jofA	365	40.92	b.69.10.1	71775
2hqqA	298	41.27		
2brxA	244	41.31	c.73.1.3	129028
1clcA	639	42.26	a.102.1.2,b.1.18.2	18835,21872
1v8bA	479	43.32	c.2.1.4,c.23.12.3	113564,113565
1dqpA	230	44.82	c.61.1.1	34069
1i0lA	221	46.28	c.61.1.1	71096
3cdxA	354	46.50		
2q4zA	312	46.74		
1bdoA	80	46.89	b.84.1.1	28214
2qj8A	332	47.92		
1hw7A	255	48.94	d.193.1.1	61297
1rkdA	309	51.00	c.72.1.1	34928
1bdo	80	53.89		
1lfoA	127	57.17	b.60.1.2	27223
2fv7A	331	60.14	c.72.1.1	134197
2e63A	170	61.81		
1jetA	517	63.44	c.94.1.1	35718
1bhuA	102	64.35	b.11.1.3	23631
2qhpA	296	64.54		
2b5nA	323	68.85		
2gvhA	288	70.11	d.38.1.1,d.38.1.1	135776,135777
2hrvA	142	70.58	b.47.1.4	26429
2v1oA	151	71.63		
1zxfA	155	74.12	d.129.3.5	125771
1zlqA	502	74.44	c.94.1.1	125253
1jxhA	288	75.41	c.72.1.2	67415
2ckkA	127	76.27		
2d1uA	104	80.94		
1smdA	496	80.96	b.71.1.1,c.1.8.1	27768,28755
1j2gA	319	83.24	d.96.1.4,d.96.1.4	103824,103825
2dcnA	311	89.43	c.72.1.1	131374