# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2evbA	74	0.5603		
1y8oB	128	1.347	b.84.1.1	122759
1hpcA	131	1.599	b.84.1.1	28221
1zkoA	136	1.620		
2odiA	238	5.238		
2ihoA	293	9.205		
2ajrA	331	11.33	c.72.1.1	126892
2qf7A	1165	12.09		
1tc1A	220	15.71	c.61.1.1	34083
1bdoA	80	20.53	b.84.1.1	28214
1bdo	80	21.21		
2brxA	244	21.43	c.73.1.3	129028
1kkhA	317	26.93	d.14.1.5,d.58.26.3	72645,72646
2e63A	170	28.71		
1qksA	567	29.76	a.3.1.2,b.70.2.1	15951,27710
2qj8A	332	31.22		
3cdxA	354	33.24		
2q4zA	312	35.72		
1lfoA	127	36.26	b.60.1.2	27223
1hw7A	255	44.18	d.193.1.1	61297
2ehjA	208	44.84		
2hqqA	298	45.75		
1rkdA	309	46.88	c.72.1.1	34928
1ywmA	200	49.44		
1ftpA	133	49.53	b.60.1.2	27199
2fv7A	331	52.32	c.72.1.1	134197
1mppA	361	53.28	b.50.1.2	26856
2go3A	267	56.21	d.14.1.7,d.14.1.7	135422,135423
1jofA	365	57.77	b.69.10.1	71775
1vqoA	240	58.49	b.34.5.3,b.40.4.5	120361,120362
2hrvA	142	59.01	b.47.1.4	26429
2d1uA	104	65.07		
1bhuA	102	65.18	b.11.1.3	23631
1clcA	639	66.53	a.102.1.2,b.1.18.2	18835,21872
1jxhA	288	67.25	c.72.1.2	67415
1p42A	270	68.65	d.14.1.7,d.14.1.7	87754,87755
2z00A	426	70.58		
2dcnA	311	77.01	c.72.1.1	131374
2qhpA	296	78.26		
1ub1A	133	79.65	d.10.1.3	99140
2gu2A	312	80.71		
1i0lA	221	83.38	c.61.1.1	71096
2afbA	351	84.47	c.72.1.1	126674
2pkfA	334	84.60		
1z9vA	121	89.48