# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2evbA	74	0.8719		
1zkoA	136	2.251		
1hpcA	131	2.323	b.84.1.1	28221
1y8oB	128	2.383	b.84.1.1	122759
2ajrA	331	4.880	c.72.1.1	126892
2odiA	238	9.569		
2qf7A	1165	13.11		
2ihoA	293	14.59		
1tc1A	220	14.75	c.61.1.1	34083
1qksA	567	17.39	a.3.1.2,b.70.2.1	15951,27710
2q4zA	312	18.97		
1bdoA	80	25.63	b.84.1.1	28214
2brxA	244	26.81	c.73.1.3	129028
1bdo	80	27.26		
2hqqA	298	28.21		
2e63A	170	31.12		
1lfoA	127	31.66	b.60.1.2	27223
2fv7A	331	33.63	c.72.1.1	134197
1jofA	365	33.73	b.69.10.1	71775
1rkdA	309	36.03	c.72.1.1	34928
1ftpA	133	37.07	b.60.1.2	27199
2dcnA	311	37.85	c.72.1.1	131374
1hw7A	255	40.90	d.193.1.1	61297
2qhpA	296	43.19		
1zxfA	155	43.76	d.129.3.5	125771
2qj8A	332	44.94		
2z00A	426	46.58		
1fmtA	314	47.09	b.46.1.1,c.65.1.1	25758,34174
1vqoA	240	47.90	b.34.5.3,b.40.4.5	120361,120362
1gxcA	149	51.39	b.26.1.2	70687
2hrvA	142	55.10	b.47.1.4	26429
2a9gA	418	57.04	d.126.1.4	126435
2v1oA	151	59.10		
3cdxA	354	59.83		
1v8bA	479	68.89	c.2.1.4,c.23.12.3	113564,113565
1kkhA	317	69.12	d.14.1.5,d.58.26.3	72645,72646
2d1uA	104	70.83		
2afbA	351	75.18	c.72.1.1	126674
1rkd	309	75.96		
1ywmA	200	76.14		
1uqwA	509	77.39	c.94.1.1	99799
2nwhA	317	80.88		
2blnA	305	81.27	b.46.1.1,c.65.1.1	128734,128735
2go3A	267	82.91	d.14.1.7,d.14.1.7	135422,135423
1at0A	145	83.52	b.86.1.1	28374
1fyxA	149	85.25	c.23.2.1	31128
1i0lA	221	86.37	c.61.1.1	71096