# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1zxfA	155	14.84	d.129.3.5	125771
2qf7A	1165	19.56		
1zkoA	136	20.18		
3cdxA	354	24.47		
1y8oB	128	25.41	b.84.1.1	122759
1hpcA	131	28.44	b.84.1.1	28221
1ftpA	133	29.10	b.60.1.2	27199
2evbA	74	35.47		
2eveA	157	36.32	b.122.1.8	132427
1tc1A	220	37.39	c.61.1.1	34083
1fp3A	402	37.79	a.102.1.3	18842
1vqoA	240	43.49	b.34.5.3,b.40.4.5	120361,120362
1qksA	567	45.49	a.3.1.2,b.70.2.1	15951,27710
2ajrA	331	46.30	c.72.1.1	126892
2brxA	244	49.82	c.73.1.3	129028
2h00A	254	50.77	c.66.1.54	135925
1ofzA	312	55.62	b.68.8.1	86978
2v1oA	151	55.76		
1hm9A	468	64.57	b.81.1.4,c.68.1.5	65866,65867
1ko6A	187	72.32	b.119.1.1	77471
1a5tA	334	72.46	a.80.1.1,c.37.1.20	18450,32423
2e63A	170	76.89		
2v0hA	456	79.76		
2hrvA	142	83.63	b.47.1.4	26429
2ec4A	178	83.90		
2yqcA	486	87.35		
2halA	212	89.20	b.47.1.4	136289