# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2evbA	74	0.8333		
1y8oB	128	1.873	b.84.1.1	122759
1tc1A	220	6.615	c.61.1.1	34083
2ajrA	331	7.046	c.72.1.1	126892
2qj8A	332	9.029		
1v8bA	479	11.21	c.2.1.4,c.23.12.3	113564,113565
3cdxA	354	13.92		
1zkoA	136	19.73		
2hrvA	142	19.84	b.47.1.4	26429
2v78A	313	20.24		
2ihoA	293	25.84		
1pvdA	537	25.89	c.31.1.3,c.36.1.5,c.36.1.9	31737,31777,31778
2brxA	244	26.26	c.73.1.3	129028
1hpcA	131	33.46	b.84.1.1	28221
1i0lA	221	34.19	c.61.1.1	71096
1zyoA	191	35.68		
1si7A	369	36.84	d.265.1.4	98883
2hqqA	298	36.95		
2abqA	306	38.11	c.72.1.1	126528
1zjcA	418	40.41	e.60.1.1	125147
1bdo	80	40.92		
2nwhA	317	41.69		
2afbA	351	41.82	c.72.1.1	126674
1bdoA	80	44.46	b.84.1.1	28214
2oo3A	283	48.17		
1v84A	253	49.27	c.68.1.7	108419
1vqoA	240	50.27	b.34.5.3,b.40.4.5	120361,120362
2h36X	112	51.11		
1zpdA	568	51.42	c.31.1.3,c.36.1.5,c.36.1.9	31741,31785,31786
2cxvA	219	52.52	b.47.1.4	131012
3ce9A	354	53.03		
2vojA	371	53.03		
2g1iA	563	53.59		
2qhpA	296	55.60		
1v8aA	265	58.89	c.72.1.2	100494
1a5tA	334	59.25	a.80.1.1,c.37.1.20	18450,32423
2fmpA	335	60.45	a.60.6.1,a.60.12.1,d.218.1.2	133786,133787,133788
2halA	212	66.02	b.47.1.4	136289
1nc5A	373	73.61	a.102.1.6	85548
2hqbA	296	74.39		
2f02A	323	74.68	c.72.1.1	132649
1vbkA	307	79.23	c.26.2.6,d.308.1.1	119957,119958
2glxA	332	79.29		
2fssA	365	81.82		
1qmeA	702	84.16	d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1	37487,37488,42560,42769
1ml4A	308	86.72	c.78.1.1,c.78.1.1	79255,79256
2vbfA	570	87.78		
2dknA	255	88.81