# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1y8oB 128 0.3132 b.84.1.1 122759 1zi0A 307 0.7634 2qj8A 332 1.124 2cy5A 140 1.699 b.55.1.2 131018 3cdxA 354 2.257 1suuA 312 2.261 b.68.10.1 99006 1pguA 615 3.352 b.69.4.1,b.69.4.1 88069,88070 2pbiB 354 5.526 1zkoA 136 5.692 1nr0A 611 10.32 b.69.4.1,b.69.4.1 86078,86079 1wp5A 323 10.58 b.68.10.1 114780 1gotB 340 10.76 b.69.4.1 27648 1b77A 228 10.83 d.131.1.2,d.131.1.2 41362,41363 1erjA 393 11.61 b.69.4.1 27660 2a74A 643 12.19 2evbA 74 12.67 3c26A 266 13.31 2bs3A 656 14.17 a.7.3.1,c.3.1.4,d.168.1.1 129042,129043,129044 1x1oA 286 15.33 2bs2A 660 16.64 a.7.3.1,c.3.1.4,d.168.1.1 129030,129031,129032 1a0rB 340 19.10 b.69.4.1 27658 2uzxB 727 19.54 1z2zA 446 20.58 2h2wA 312 21.73 2b06A 155 22.26 d.113.1.1 127624 2f6eA 127 25.45 1t6lA 290 26.66 d.131.1.2,d.131.1.2 106574,106575 2ej8A 160 27.09 2pjsA 119 27.82 2h14A 317 28.60 1zvtA 256 28.84 1a34A 159 29.89 b.121.7.1 23286 2e63A 170 31.14 1y0pA 571 31.49 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 2fdiA 211 32.89 b.82.2.10 133311 1iakA 199 34.49 b.1.1.2,d.19.1.1 21625,38199 1r13A 148 35.09 d.169.1.1,h.1.1.1 96782,96783 2cw8A 537 35.67 1mbmA 198 37.25 b.47.1.3 78916 2qe8A 343 37.32 2bcjB 340 38.11 b.69.4.1 128289 2gcuA 245 38.21 1gxrA 337 39.87 b.69.4.1 70722 1vrmA 325 40.35 d.96.2.1 120472 1bdoA 80 40.52 b.84.1.1 28214 1vqoA 240 40.63 b.34.5.3,b.40.4.5 120361,120362 2oh5A 248 41.32 2bgzA 299 42.51 2q18X 293 42.94 1qksA 567 43.12 a.3.1.2,b.70.2.1 15951,27710 1bdo 80 45.32 2q9uA 414 45.51 1vk3A 615 45.83 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 1te0A 318 45.97 b.36.1.4,b.47.1.1 112400,112401 1zkpA 268 46.26 d.157.1.9 125205 2gnqA 336 47.35 1uf3A 228 47.54 d.159.1.6 99317 2ef7A 133 48.33 1m98A 317 50.06 a.175.1.1,d.17.4.6 78866,78867 1qh5A 260 50.42 d.157.1.2 42057 1cqqA 180 51.37 b.47.1.4 26422 2odsA 265 54.60 1hpcA 131 55.61 b.84.1.1 28221 1fl2A 310 55.80 c.3.1.5,c.3.1.5 59869,59870 2gnrA 145 57.17 2dlbA 80 57.22 2j9iA 421 59.45 2r6gF 514 60.02 1vmfA 145 60.32 d.273.1.1 113673 2bzlA 325 62.94 1q7hA 153 63.83 b.122.1.1,d.17.6.2 96042,96043 1t3qB 788 65.13 d.41.1.1,d.133.1.1 106369,106370 2p9rA 102 65.39 1y7mA 164 66.53 b.160.1.1,d.7.1.1 122696,122697 1yymG 313 67.40 d.172.1.1 124232 2qxvA 361 67.43 1obrA 326 67.78 c.56.5.2 33828 2vktA 289 68.64 1qpoA 284 70.89 c.1.17.1,d.41.2.1 29561,38597 2fjbA 643 72.73 2ostA 151 73.48 1s68A 249 73.67 d.142.2.4 98591 2yvtA 260 73.74 1f8eA 388 73.95 b.68.1.1 59694 2elaA 175 74.84 2yvpA 182 75.21 2ewcA 126 77.06 d.79.1.1 132454 1nkiA 135 78.65 d.32.1.2 91941 2nujA 163 80.43 d.38.1.1 138608 1l1nA 183 81.10 b.47.1.4 73476 1vpmA 169 81.25 d.38.1.1 113967 2jbmA 299 81.58 1v84A 253 82.24 c.68.1.7 108419 1feuA 206 82.49 b.53.1.1 59801 2ny1A 317 83.81 2a6aA 218 84.49 c.55.1.9,c.55.1.9 126231,126232 2hvqA 335 84.96 2g2uB 165 85.21 d.98.1.1 134541 3pmgA 561 85.56 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 2bphA 140 87.45 1iz5A 249 88.59 d.131.1.2,d.131.1.2 83834,83835 1rsy 152 89.09 2dkfA 431 89.19 1jnrA 643 89.93 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968