(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.cse.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0397 hypothetical protein MMP0046, Methanococcus maripaludis s2, 150 residues
                     10              20        30                   40 
                     |               |         |                    | 
   1 ...M.KIPKIYVE...G.ELNDGDRV...A..IEKDGNAIIFLEKD..E...EYSG.....N.GK
   2 ...M.KIPKIYVE...G.ELNDGDRV...A..IEKDGNAIIFLEKD..E...EYSG.....N.GK
   3 ...M.KIPKIYVE...G.ELNDGDRV...A..IEKDGNAIIFLEEN..E...EYSG.....N.GK
   4 ...M.KIPKIYVE...G.ELNDGDRV...A..IEKDGNAIIFLEEN..E...EYSG.....N.GK
   5 ...M.KIPKIYVE...G.ELNDGERV...A..IENNGKIIIFLEEN..E...EYSG.....N.GK
   6 ...M.KIPKIYIE...G.ELNDNNKV...V..IENEGKKIIFLEKE..D...EYFG.....D.GK
   7 ggkMgRLPQLFVEverE.ECLEGDKVkyeC..IIIQDNIEVKLKEG..E...RVPDfinieR.AK
   8 ...MsRLPQLYVEvpkE.ECLEGRKVkheC..IIIQDNLEVKLGEG..D...EIPDfvdldR.AK
   9 ...MsRTPQLYVEvpkE.ECLEGRRVkhdC..IVIQDNIEVRLREG..E...EVPEfiqvdK.AK
  10 mniM.RIPRLYVE...NaEKHEGRKV...V..IENGGKVIKFLDKD..E...EYEG.....D.GK
  11 ...MeKLPKLYVEttqE.ECVKDGKTlaeC..VVIMGNVEVWLKEN..E...ELPDfidpsR.AK
  12 ...M.KIPKLYVE...N.NIFEDNEP...CekIAVSEKEIIFLDSD..EvvdNYKN.....T.HK
  13 ...M.ALPRIYVEt..D.EVPESGKI...L..LTDPEFEVIVRSRElaE...KIAEel...D.EP
  14 mekY.RYPEVFVE...G.--VESDKY...V..LEINEHYILVLTKEdlE...KYVN.....Y.KR
  15 rspY.HIPRIYIE...G.-IGSDEYL...E..LVDSTARRTDRCSG..R...RCFG.....-.-K
  16 pedY.RFPELYLE...G.YV--SERA...I..WVDEEEGKYYRRPV..E...GLKR.....Y.GL
  17 mdpY.KFPRLFVE...G.--KEGEEY...A..VV-EGDEVVFVK--..E...KVPG.....AlGK


              50           60             70           80        90    
              |            |              |            |         |    
   1 LLY.QVIYDDLAKYMS..L.DTLK..KDVLIQYP...DKH.TL..TYLKAGTKLISVPAEGYKVY
   2 LLY.QVIYDDLAKYMS..L.DTLK..KDVLIQYP...DKH.TF..TYLKAGTKLISVPAEGYKVY
   3 LLY.RVIYDDLAKYLS..L.DELK..KDVLIQYP...DKH.TF..TYLKAGTKLVSVVAEGYEVY
   4 LLY.QVIYDDLAKYLS..L.DKLK..KDVLIQYP...DKH.TF..TYLKAGIKLVSVVAEGYEVY
   5 LLY.TVIYDDLVKYLS..L.NKLK..KDVLIQYP...DKH.TV..TYLKTGTELISVVAEGYEVY
   6 VLY.QVIYDDLSKYLV..L.NKLK..KDIFIKFP...DNR.TF..SYIKKGTELILVPAEGYKVY
   7 FLA.KEIYDRFHFYVDqyE.HKMR..VDAIIVYP...DRR.TK..MYLRKGDELMLLPVEGYVVT
   8 FLA.KEIYDRFHFYVDqyE.HRMK..VDAIIVYP...DRR.TK..IYLKKGDELLLLPVEGYVVT
   9 FLA.KEIYDRFHFYVDhyE.HRMK..VDAIIVYP...DRR.TK..IYLKKGDELLLLPVEGYVVT
  10 VLY.QVIYDDFDNYVL..M.GTVT..KDMIIEYEvg.GVR.QI..TYIKKGTKLLEIPAEGYKVY
  11 FLK.REVYDRFYLYVDrtE.QKMT..ADVILVLP...DGR.TR..IYLKKGDELMILPVEGFTKT
  12 ILY.KVRYDDIRSYID..N.DVLK..KDIFVKYP...GNH.TF..THIKAGTYITCVLADSKTTY
  13 IFYeQVVYEEARSVFD..V.PEAKvtRHVVIEPV...DRR.SL..VFLKPGDRVYQIPVEGYVVT
  14 VFG.HIIYEHIINYID..LvKPAT..KKAFIVIPeysGEK.EMngFLIDENKKLCLIEVKGIQPY
  15 AIY.GTLLDEIADLLA..K.KATR..SFIVVLPP...DYR.KG..LLVEAGSYLEPVPLEGMRVV
  16 AVY.EHAIKEAIDLVG..-.SRVS..RGFVVVIP...WKGmRG..LMLREGTRVKLVEAAGVQVS
  17 VPY.EIPLDEIVDKLK..E.-EAK..VTFLIHLP...NED.KA..ILVPKGSKVKLFKVSHVKVG


         100       110       120       130              140           1
          |         |         |         |                |            
   1 PIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTV.IFMN.EI.PS....ERA..N.YVFYMLE
   2 PIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTV.IFMN.EI.PS....ERA..N.YVFYMLE
   3 PIMDFGFRVLKGYRLATLKSKKGDLRYANSPISGTV.IFMN.EI.PS....ERA..N.YVFYMLE
   4 PIMDFGFRVLKGYRLATLKSKKGDLRYVNSPVSGTV.IFMN.EV.PS....ERA..N.YVFYMIE
   5 PIMDFGFRVLKGYRLATLKSKKGDLRYVNSPVSGTV.IFMN.EI.PS....ERA..N.YVFYMLE
   6 PILDFGYRVLKGYRLAGLESKKGDIRYVNSPVNGTV.VFMN.EI.PS....ERP..N.YVFYILE
   7 LIADVGNRVRKGDPFAAITTRKGEVHYLKPPKPGTV.VYID.EF.-T....NRP..H.YVYYILP
   8 LIADVGNRVRKGDAFAAVTTRKGEVHYLKPPRPGTV.VYID.EF.-T....NRP..H.YVYYILP
   9 LIADVGNRVRKGDAFAAVTTRKGEVHYLKPPKPGTV.VYID.EF.-T....NRP..H.YIYYILP
  10 PIVDFGCRILGGHRIAALQSRKGDIRFVNTPVNGIV.LFLK.EV.PA....KRE..N.YVFYILP
  11 LIANVGNRVRTGDAFAAVTTRKGEVHYLKPPKTGTV.VFID.EI.-T....NRP..H.YLYYILP
  12 PILDAGSVVLRDGILATLKSNKGVIRYLKSPVSGTV.FFMN.EIfEG....NNS..I.YLFAIVE
  13 PIADVGDRLRKGDPLAAVTTRSGNVRYVEAPQDCLV.VYVC.EQ.PAirtqRRP..N.YEYYIAP
  14 VFPREGDEIEERDKVAYIITGKGEVRTIRSPCKGVV.LLVI.NF.PW....EKP..EkYVLAVVN
  15 IHVCEGDRVEEGSTLGFIATRKFEVRHIRSHVEGVV.VYIY.SS.PE....GPPdrN.IVF-IAP
  16 HYSLEGTRVGERSVLSYVLTGKGETRTLRAGVEGVVaIILT.DH.NR....QPP..A.YIYVIAD
  17 VTVKEGDELEEGDTYAYGLTGKGEVRRFRSIVKGKV.VMVHwEP.YG....GRD..D.YHVLVVP


      50   
      |   
   1 .E...
   2 .E...
   3 .E...
   4 .E...
   5 .E...
   6 .E...
   7 .Ee..
   8 .El..
   9 .Ef..
  10 .Eeei
  11 .Ee..
  12 .Nsev
  13 tE...
  14 .Kndi
  15 .Eevv
  16 .Ehdv
  17 .Egak