# List of top-scoring protein chains for T0397.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1brwA	433	7.233	a.46.2.1,c.27.1.1,d.41.3.1	17764,31628,38626
2czlA	272	7.704	c.94.1.1	131055
1rpxA	230	11.49	c.1.2.2	28536
1labA	80	18.59	b.84.1.1	28226
2dneA	108	19.26		
2gaiA	633	20.80		
1mk4A	157	27.75	d.108.1.1	84979
1tqjA	230	28.55	c.1.2.2	107228
1hpcA	131	29.13	b.84.1.1	28221
1z9bA	135	31.85		
1wzuA	300	36.92	c.145.1.1	121528
1pszA	303	41.04	c.92.2.2	35600
1z6hA	72	44.44		
1s1iB	253	44.85	i.1.1.1	105176
1zkoA	136	47.87		
1bhuA	102	48.06	b.11.1.3	23631
2edgA	130	53.96		
1lmeA	176	56.85	d.167.1.1	84629
1efhA	292	58.82	c.37.1.5	31948
1orvA	728	61.65	b.70.3.1,c.69.1.24	87354,87355
2bazA	142	62.29		
1kkhA	317	74.28	d.14.1.5,d.58.26.3	72645,72646
1seiA	130	75.46	d.140.1.1	41463
1ov4A	293	76.70	c.37.1.5	93581
3bjoA	103	82.04		
1gjxA	81	84.69	b.84.1.1	65222
1visA	324	85.74	d.14.1.5,d.58.26.3	100769,100770
1m9mA	415	87.05	d.174.1.1	74595
2ejmA	99	87.92		
3crkC	87	88.25		
3nosA	427	88.44	d.174.1.1	42520
1za7A	165	89.47