# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1zkoA	136	0.3506		
1hpcA	131	0.7278	b.84.1.1	28221
1htp	131	0.9612		
2evbA	74	0.9897		
2bcoA	350	1.633	c.56.5.7	128302
2e63A	170	1.865		
1y8oB	128	2.150	b.84.1.1	122759
1vqoA	240	3.417	b.34.5.3,b.40.4.5	120361,120362
1k8mA	93	4.063	b.84.1.1	68314
1ghj	79	4.119		
2q4zA	312	4.639		
2h1qA	270	4.891		
1bdo	80	5.849		
2qf7A	1165	6.352		
2blnA	305	6.781	b.46.1.1,c.65.1.1	128734,128735
1rkd	309	7.832		
1clcA	639	8.996	a.102.1.2,b.1.18.2	18835,21872
1t5eA	360	9.769	f.46.1.1	106436
2odiA	238	11.36		
1ftpA	133	12.96	b.60.1.2	27199
1llnA	262	15.49	d.165.1.1	84625
2fv7A	331	15.53	c.72.1.1	134197
1vm7A	311	15.79	c.72.1.1	108884
1bdoA	80	17.57	b.84.1.1	28214
2hlzA	312	18.56		
2grvA	621	22.59		
2nwhA	317	22.78		
2dcnA	311	23.19	c.72.1.1	131374
1clc	639	23.19		
2j5uA	255	24.78		
2h8gA	267	25.30		
2ajrA	331	26.28	c.72.1.1	126892
1sgoA	139	26.72	d.82.3.1	98857
2gnrA	145	27.11		
1m55A	197	30.80	d.89.1.3	74469
3cdxA	354	34.77		
3c0dA	119	36.53		
1vz0A	230	36.54	a.4.14.1,d.268.1.1	108929,108930
1yleA	342	37.02	d.108.1.8	123647
1at0	145	37.49		
2afbA	351	38.36	c.72.1.1	126674
1lfoA	127	38.59	b.60.1.2	27223
1ee8A	266	39.17	a.156.1.2,b.113.1.1,g.39.1.8	75823,75824,75825
1p42A	270	39.82	d.14.1.7,d.14.1.7	87754,87755
1wpgA	994	42.01	b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1	114806,114807,114808,114809
2oplA	187	44.04		
1rl2A	137	44.53	b.34.5.3,b.40.4.5	24610,25342
1kdj	102	44.98		
1m0wA	491	46.22	c.30.1.4,d.142.1.6	78363,78364
1ywmA	200	46.52		
1jssA	224	46.80	d.129.3.2	71844
1hw7A	255	46.93	d.193.1.1	61297
2v78A	313	50.23		
1ub0A	258	51.04	c.72.1.2	88394
2ddmA	283	51.09		
1eziA	228	52.47	c.68.1.13	34512
2h4tA	626	52.98		
1v1aA	309	56.73	c.72.1.1	100249
2rauA	354	56.93		
2go3A	267	59.08	d.14.1.7,d.14.1.7	135422,135423
1zud2	66	60.67		
1k2eA	156	61.72	d.113.1.1	72010
1rkdA	309	62.91	c.72.1.1	34928
1amuA	563	64.35	e.23.1.1	43351
1v9sA	208	65.13	c.61.1.1	119894
2qcvA	332	65.14		
1tvfA	369	65.94	b.105.1.2,e.3.1.1	107358,107359
2qhpA	296	66.34		
2r6uA	148	66.93		
1ekqA	272	70.56	c.72.1.2	34941
1l0gA	358	72.12	e.3.1.1	73400
1tyyA	339	72.58	c.72.1.1	112850
2hqqA	298	72.85		
2qm4A	235	80.08		
1ig3A	263	80.39	b.82.6.1,c.100.1.1	62358,62359
2gu1A	361	81.06		
1fmtA	314	82.44	b.46.1.1,c.65.1.1	25758,34174
1thv	207	83.28		
1l1nA	183	84.45	b.47.1.4	73476
1jxhA	288	87.81	c.72.1.2	67415