# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1zkoA	136	0.1485		
2evbA	74	0.3353		
2bcoA	350	0.4139	c.56.5.7	128302
1hpcA	131	0.7909	b.84.1.1	28221
1htp	131	0.8666		
1y8oB	128	1.105	b.84.1.1	122759
2e63A	170	1.138		
1ghj	79	1.592		
2q4zA	312	1.913		
2qf7A	1165	2.104		
2blnA	305	2.347	b.46.1.1,c.65.1.1	128734,128735
1bdo	80	2.957		
1k8mA	93	3.255	b.84.1.1	68314
2h1qA	270	4.855		
1bdoA	80	5.040	b.84.1.1	28214
1clcA	639	9.835	a.102.1.2,b.1.18.2	18835,21872
1t5eA	360	10.11	f.46.1.1	106436
1clc	639	10.57		
1vqoA	240	11.37	b.34.5.3,b.40.4.5	120361,120362
2odiA	238	13.83		
1rkd	309	17.43		
2hlzA	312	18.21		
1p42A	270	18.66	d.14.1.7,d.14.1.7	87754,87755
2nwhA	317	19.13		
2dcnA	311	22.51	c.72.1.1	131374
3cdxA	354	22.84		
1l0gA	358	28.04	e.3.1.1	73400
1llnA	262	29.99	d.165.1.1	84625
2go3A	267	31.23	d.14.1.7,d.14.1.7	135422,135423
1vz0A	230	31.74	a.4.14.1,d.268.1.1	108929,108930
1sgoA	139	35.85	d.82.3.1	98857
2j5uA	255	36.01		
1ee8A	266	36.18	a.156.1.2,b.113.1.1,g.39.1.8	75823,75824,75825
2ajrA	331	37.33	c.72.1.1	126892
1ftpA	133	37.85	b.60.1.2	27199
1v9sA	208	37.96	c.61.1.1	119894
1fmtA	314	38.36	b.46.1.1,c.65.1.1	25758,34174
2oplA	187	38.84		
2h4tA	626	39.04		
1ywmA	200	39.44		
2grvA	621	39.61		
1wpgA	994	40.85	b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1	114806,114807,114808,114809
2gnrA	145	41.34		
1vm7A	311	42.38	c.72.1.1	108884
2h8gA	267	42.89		
1lfoA	127	43.09	b.60.1.2	27223
1bxvA	91	43.45	b.6.1.1	22875
2fv7A	331	44.14	c.72.1.1	134197
1nnwA	252	44.61	d.159.1.5	80674
1ub0A	258	45.19	c.72.1.2	88394
1twuA	139	45.64	d.32.1.8	107413
1ut9A	609	45.91	a.102.1.2,b.1.18.2	99912,99913
2ddmA	283	49.25		
1zvtA	256	52.92		
2r6uA	148	57.23		
1eziA	228	57.66	c.68.1.13	34512
1thv	207	59.70		
1m0wA	491	60.16	c.30.1.4,d.142.1.6	78363,78364
2v78A	313	60.18		
2f2fA	222	61.41	b.42.2.1	132810
2hgsA	474	61.66	c.30.1.4,d.142.1.6	31722,75997
2hrvA	142	62.01	b.47.1.4	26429
1xocA	520	63.43	c.94.1.1	122201
2rauA	354	67.14		
1kdj	102	67.85		
2c0dA	221	69.15		
1m93B	245	72.99		
2d73A	738	73.29		
1zud2	66	74.65		
2o7iA	592	75.00		
2coiA	386	77.08		
1ig3A	263	77.68	b.82.6.1,c.100.1.1	62358,62359
1y56B	382	77.86		
1ekqA	272	80.06	c.72.1.2	34941
2pz4A	239	81.38		
2omkA	231	83.52		
2dq6A	870	85.17		
1hvyA	288	86.14	d.117.1.1	41049
1pjxA	314	86.32	b.68.6.1	104167
2debA	653	86.80