# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1zkoA 136 0.2263 1lfoA 127 0.2958 b.60.1.2 27223 1y8oB 128 0.3557 b.84.1.1 122759 2evbA 74 0.3721 1htp 131 0.4611 1hpcA 131 0.5025 b.84.1.1 28221 2bcoA 350 1.660 c.56.5.7 128302 1ghj 79 1.744 2e63A 170 2.776 1ftpA 133 3.260 b.60.1.2 27199 1vqoA 240 3.879 b.34.5.3,b.40.4.5 120361,120362 1bdo 80 4.402 2q4zA 312 4.470 1k8mA 93 5.159 b.84.1.1 68314 2odiA 238 5.330 1zjcA 418 5.490 e.60.1.1 125147 2h1qA 270 5.782 1bdoA 80 7.318 b.84.1.1 28214 1ee8A 266 9.381 a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1bxvA 91 9.473 b.6.1.1 22875 1wxrA 1048 9.845 2nwhA 317 10.54 2blnA 305 11.60 b.46.1.1,c.65.1.1 128734,128735 1p42A 270 12.94 d.14.1.7,d.14.1.7 87754,87755 2dc0A 434 13.18 2h4tA 626 13.81 2j5uA 255 14.18 2d73A 738 14.72 1clcA 639 15.08 a.102.1.2,b.1.18.2 18835,21872 3c0dA 119 16.43 1yleA 342 17.14 d.108.1.8 123647 1umkA 275 17.51 b.43.4.2,c.25.1.1 113312,113313 2qf7A 1165 17.71 1gp6A 356 18.20 b.82.2.1 65441 1v9sA 208 18.45 c.61.1.1 119894 1h30A 422 18.70 b.29.1.4,b.29.1.4 76604,76605 1w9yA 319 18.86 b.82.2.1 120801 1t5eA 360 20.02 f.46.1.1 106436 3c6kA 381 20.23 2go3A 267 20.47 d.14.1.7,d.14.1.7 135422,135423 2ihoA 293 22.01 1clc 639 22.29 1tq5A 242 24.35 b.82.1.12 119311 1h2wA 710 24.89 b.69.7.1,c.69.1.4 76596,76597 3cdxA 354 25.75 1id2A 106 25.88 b.6.1.1 62288 2pfrA 294 26.41 1npeA 267 26.51 b.68.5.1 92032 1rkd 309 27.04 1m55A 197 27.91 d.89.1.3 74469 2g7iA 125 28.01 2debA 653 28.44 2gu1A 361 29.63 1amuA 563 31.55 e.23.1.1 43351 1h8dH 260 33.41 2ghsA 326 34.18 b.68.6.1 135209 1fmtA 314 34.71 b.46.1.1,c.65.1.1 25758,34174 1ag6A 99 35.68 b.6.1.1 22857 1l0gA 358 36.45 e.3.1.1 73400 1kdj 102 36.54 1x0cA 549 36.68 1vyfA 135 36.73 b.60.1.2 108902 1plcA 99 37.25 b.6.1.1 22846 1wpgA 994 37.54 b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1 114806,114807,114808,114809 1ywmA 200 38.39 2fv7A 331 39.43 c.72.1.1 134197 2qj8A 332 40.31 2eixA 243 40.32 2hsiA 282 40.38 2aujD 309 40.98 2ffuA 501 41.18 1vz0A 230 41.54 a.4.14.1,d.268.1.1 108929,108930 1sfdA 105 42.62 b.6.1.1 105480 2cf8H 257 42.97 1i7pA 274 43.38 b.43.4.2,c.25.1.1 66048,66049 1llnA 262 43.57 d.165.1.1 84625 1ofzA 312 44.62 b.68.8.1 86978 1yu2A 381 45.25 b.163.1.1,d.169.1.8 124029,124030 1pkhA 204 45.34 b.85.4.1 94832 1pjjA 271 45.93 a.156.1.2,b.113.1.1,g.39.1.8 104164,104165,104166 2et1A 201 46.17 b.82.1.2 132351 1k3xA 262 46.21 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 2omkA 231 47.37 2yueA 168 47.73 2o39C 126 47.83 g.18.1.1,g.18.1.1 138898,138899 2coiA 386 48.43 1tg0A 68 49.77 1havA 217 54.46 b.47.1.4 26423 2polA 366 55.55 d.131.1.1,d.131.1.1,d.131.1.1 41356,41357,41358 1jxgA 100 56.40 b.6.1.1 67413 1yllA 200 57.07 b.82.1.17 123653 1sbxA 106 57.61 a.6.1.4 105414 1v47A 349 57.67 b.122.1.3,c.26.1.5 100292,100293 2p1gA 249 57.84 1ts9A 102 59.11 b.137.1.1 112618 1ig0A 319 59.33 b.82.6.1,c.100.1.1 62354,62355 1thv 207 59.75 1wdxA 69 60.03 1eziA 228 64.59 c.68.1.13 34512 1yw4A 341 65.03 c.56.5.7 124131 2h8gA 267 65.88 1ig3A 263 66.37 b.82.6.1,c.100.1.1 62358,62359 2aukA 190 68.77 1y97A 238 69.25 c.55.3.5 122773 2cirA 297 71.06 1genA 218 72.36 b.66.1.1 27536 1qx4A 274 73.18 b.43.4.2,c.25.1.1 104624,104625 2cduA 452 74.30 1at0 145 74.49 1rl2A 137 74.92 b.34.5.3,b.40.4.5 24610,25342 1m0wA 491 75.74 c.30.1.4,d.142.1.6 78363,78364 1gprA 162 76.47 b.84.3.1 28267 1zud2 66 76.90 1fzqA 181 77.09 c.37.1.8 32060 2g9zA 348 77.29 2awkA 228 77.55 2a13A 166 78.86 b.60.1.8 125971 2pkfA 334 79.86 2ea7A 434 80.07 1ey4A 149 80.43 b.40.1.1 24815 1bb9 115 80.55 1tdtA 259 81.33 b.81.1.2 28055 1rcy 151 82.83 1e30A 155 82.96 b.6.1.1 23016 1vp2A 208 84.23 c.51.4.1 113933 1y13A 181 84.27 d.96.1.2 116319 1gpr 162 86.26 1x31B 404 86.84 2ccvA 101 87.08 b.154.1.1 130258 2j6aA 141 87.09 2pz4A 239 87.47