# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1zkoA	136	0.7529		
2evbA	74	1.453		
2bcoA	350	1.520	c.56.5.7	128302
1hpcA	131	1.600	b.84.1.1	28221
1htp	131	1.762		
1y8oB	128	2.117	b.84.1.1	122759
2e63A	170	2.578		
2blnA	305	3.354	b.46.1.1,c.65.1.1	128734,128735
2odiA	238	3.433		
2q4zA	312	3.689		
3c0dA	119	5.221		
1clcA	639	5.835	a.102.1.2,b.1.18.2	18835,21872
1vqoA	240	6.388	b.34.5.3,b.40.4.5	120361,120362
1lfoA	127	6.463	b.60.1.2	27223
1bdo	80	8.588		
1y13A	181	9.331	d.96.1.2	116319
1ghj	79	9.401		
1clc	639	9.624		
1k8mA	93	11.61	b.84.1.1	68314
2qf7A	1165	13.27		
1bdoA	80	15.28	b.84.1.1	28214
1rkd	309	17.00		
2h1qA	270	17.19		
2h8gA	267	17.76		
1ftpA	133	18.03	b.60.1.2	27199
2ajrA	331	21.13	c.72.1.1	126892
2p4oA	306	23.13		
1vm7A	311	23.22	c.72.1.1	108884
2nwhA	317	23.40		
2qj8A	332	23.52		
1p42A	270	27.04	d.14.1.7,d.14.1.7	87754,87755
2hlzA	312	27.22		
1pjjA	271	28.68	a.156.1.2,b.113.1.1,g.39.1.8	104164,104165,104166
1l0gA	358	33.87	e.3.1.1	73400
2ddmA	283	34.61		
1ee8A	266	35.81	a.156.1.2,b.113.1.1,g.39.1.8	75823,75824,75825
1ywmA	200	37.40		
2go3A	267	38.17	d.14.1.7,d.14.1.7	135422,135423
2fv7A	331	39.47	c.72.1.1	134197
1rl2A	137	41.12	b.34.5.3,b.40.4.5	24610,25342
1r2zA	274	41.64	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
1fmtA	314	43.64	b.46.1.1,c.65.1.1	25758,34174
2grvA	621	47.33		
2j5uA	255	47.72		
1t5eA	360	48.07	f.46.1.1	106436
1ekqA	272	48.12	c.72.1.2	34941
2h4tA	626	54.86		
1genA	218	55.03	b.66.1.1	27536
3bwvA	180	55.92		
1m0wA	491	58.55	c.30.1.4,d.142.1.6	78363,78364
1v9sA	208	59.07	c.61.1.1	119894
2v78A	313	60.27		
2gnrA	145	62.83		
2jexA	209	65.28		
1k82A	268	66.11	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
2oplA	187	68.34		
2b5nA	323	69.62		
1kdj	102	69.77		
3cdxA	354	71.35		
2d73A	738	72.24		
1v1aA	309	75.23	c.72.1.1	100249
1llnA	262	75.59	d.165.1.1	84625
1ub0A	258	76.30	c.72.1.2	88394
1vz0A	230	76.90	a.4.14.1,d.268.1.1	108929,108930
1pexA	207	78.33	b.66.1.1	27540
1gprA	162	80.87	b.84.3.1	28267
1odmA	331	85.55	b.82.2.1	86875
1amuA	563	86.18	e.23.1.1	43351
1zj6A	187	87.68	c.37.1.8	125145
1at0	145	88.17		
2o7iA	592	88.45		
1k3xA	262	88.57	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
2awkA	228	88.76		
1tdzA	272	88.91	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789