# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2bcoA	350	1.185	c.56.5.7	128302
2q4zA	312	1.799		
1zkoA	136	1.843		
2evbA	74	1.853		
1y8oB	128	2.682	b.84.1.1	122759
1htp	131	3.387		
2odiA	238	3.912		
1hpcA	131	4.112	b.84.1.1	28221
2e63A	170	4.520		
2blnA	305	6.797	b.46.1.1,c.65.1.1	128734,128735
2qf7A	1165	7.662		
2h1qA	270	9.585		
1clc	639	10.48		
1clcA	639	10.71	a.102.1.2,b.1.18.2	18835,21872
1bdo	80	12.37		
1ghj	79	13.01		
1k8mA	93	13.65	b.84.1.1	68314
1vqoA	240	14.70	b.34.5.3,b.40.4.5	120361,120362
1lfoA	127	17.89	b.60.1.2	27223
3c0dA	119	17.90		
1y13A	181	18.26	d.96.1.2	116319
2qj8A	332	19.06		
2j5uA	255	21.02		
1bdoA	80	21.62	b.84.1.1	28214
1ftpA	133	24.72	b.60.1.2	27199
1rkd	309	30.12		
2nwhA	317	33.83		
2h4tA	626	37.42		
2hlzA	312	38.97		
1t5eA	360	39.71	f.46.1.1	106436
1llnA	262	41.84	d.165.1.1	84625
1vm7A	311	48.70	c.72.1.1	108884
1vz0A	230	50.06	a.4.14.1,d.268.1.1	108929,108930
1l0gA	358	50.20	e.3.1.1	73400
1yleA	342	50.24	d.108.1.8	123647
2h8gA	267	51.03		
2grvA	621	52.55		
1ywmA	200	52.72		
1m0wA	491	53.38	c.30.1.4,d.142.1.6	78363,78364
1ekqA	272	54.59	c.72.1.2	34941
1v9sA	208	54.82	c.61.1.1	119894
2ddmA	283	55.67		
1ee8A	266	56.91	a.156.1.2,b.113.1.1,g.39.1.8	75823,75824,75825
1p42A	270	57.37	d.14.1.7,d.14.1.7	87754,87755
3bwvA	180	62.77		
1amuA	563	63.09	e.23.1.1	43351
2o7iA	592	63.20		
2gnrA	145	64.26		
1eziA	228	64.42	c.68.1.13	34512
1lci	550	65.73		
2dc0A	434	70.13		
2dcnA	311	72.51	c.72.1.1	131374
2go3A	267	78.10	d.14.1.7,d.14.1.7	135422,135423
2qm8A	337	78.24		
1kdj	102	78.63		
1rl2A	137	81.78	b.34.5.3,b.40.4.5	24610,25342
1wpgA	994	82.82	b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1	114806,114807,114808,114809
2ajrA	331	84.01	c.72.1.1	126892
1ub0A	258	84.95	c.72.1.2	88394
2oplA	187	87.41		
1bhuA	102	88.91	b.11.1.3	23631
1xocA	520	89.32	c.94.1.1	122201
3cdxA	354	89.65