# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2bcoA	350	0.8507	c.56.5.7	128302
1zkoA	136	0.8762		
2evbA	74	0.9816		
1htp	131	1.817		
1hpcA	131	2.244	b.84.1.1	28221
2q4zA	312	2.669		
1y8oB	128	2.741	b.84.1.1	122759
2odiA	238	4.585		
2e63A	170	5.523		
2qf7A	1165	7.118		
1bdo	80	8.155		
1clcA	639	8.646	a.102.1.2,b.1.18.2	18835,21872
2blnA	305	8.981	b.46.1.1,c.65.1.1	128734,128735
2h1qA	270	10.06		
1vqoA	240	10.32	b.34.5.3,b.40.4.5	120361,120362
1clc	639	11.40		
1ghj	79	11.63		
1k8mA	93	13.38	b.84.1.1	68314
2qj8A	332	16.23		
1lfoA	127	16.28	b.60.1.2	27223
1bdoA	80	16.80	b.84.1.1	28214
3c0dA	119	19.58		
2j5uA	255	27.46		
1ftpA	133	28.09	b.60.1.2	27199
2h8gA	267	29.42		
1rkd	309	31.26		
1y13A	181	35.37	d.96.1.2	116319
2hlzA	312	37.05		
1llnA	262	39.66	d.165.1.1	84625
1v9sA	208	39.77	c.61.1.1	119894
1p42A	270	42.92	d.14.1.7,d.14.1.7	87754,87755
1t5eA	360	43.61	f.46.1.1	106436
1vz0A	230	45.71	a.4.14.1,d.268.1.1	108929,108930
2nwhA	317	47.33		
1vm7A	311	48.63	c.72.1.1	108884
1l0gA	358	49.60	e.3.1.1	73400
1yleA	342	49.97	d.108.1.8	123647
2grvA	621	50.94		
1ekqA	272	52.75	c.72.1.2	34941
1lci	550	53.71		
2gnrA	145	55.41		
2ajrA	331	55.74	c.72.1.1	126892
1ywmA	200	55.87		
1m0wA	491	57.02	c.30.1.4,d.142.1.6	78363,78364
2h4tA	626	57.13		
3cdxA	354	57.18		
1amuA	563	58.73	e.23.1.1	43351
2go3A	267	61.23	d.14.1.7,d.14.1.7	135422,135423
1kdj	102	62.02		
3bwvA	180	67.34		
1ee8A	266	67.40	a.156.1.2,b.113.1.1,g.39.1.8	75823,75824,75825
2oplA	187	69.33		
1pjjA	271	71.74	a.156.1.2,b.113.1.1,g.39.1.8	104164,104165,104166
1rl2A	137	76.92	b.34.5.3,b.40.4.5	24610,25342
1xocA	520	77.98	c.94.1.1	122201
1uqwA	509	79.22	c.94.1.1	99799
2fv7A	331	80.01	c.72.1.1	134197
1k3xA	262	81.02	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
2dcnA	311	84.06	c.72.1.1	131374
2ddmA	283	86.14		
1y56B	382	86.29		
1wpgA	994	87.49	b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1	114806,114807,114808,114809
1y97A	238	87.51	c.55.3.5	122773
2o7iA	592	87.57		
1u7eB	154	89.01