# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1zkoA	136	2.037		
2evbA	74	3.446		
2qj8A	332	5.392		
1htp	131	6.090		
2bcoA	350	6.189	c.56.5.7	128302
1y8oB	128	6.739	b.84.1.1	122759
1hpcA	131	9.191	b.84.1.1	28221
1ghj	79	15.43		
1k8mA	93	18.36	b.84.1.1	68314
2nwhA	317	19.37		
1bdo	80	29.59		
2p1gA	249	29.94		
2fmpA	335	36.76	a.60.6.1,a.60.12.1,d.218.1.2	133786,133787,133788
1t5eA	360	41.05	f.46.1.1	106436
2dc0A	434	44.22		
1bdoA	80	47.24	b.84.1.1	28214
2brxA	244	48.50	c.73.1.3	129028
2qf7A	1165	48.94		
2j5uA	255	49.81		
2v78A	313	58.04		
3cdxA	354	60.38		
1lfoA	127	61.47	b.60.1.2	27223
1ul7A	102	66.54	d.129.6.1	99540
1vk1A	242	71.94	d.268.1.2	108634
1ftpA	133	73.56	b.60.1.2	27199
1rkd	309	81.04		
1vm7A	311	81.68	c.72.1.1	108884
1kdj	102	81.74		
2d73A	738	85.15		
2e63A	170	85.33		
2q9uA	414	85.78		
2dcnA	311	87.61	c.72.1.1	131374