# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2blnA 305 0.2132 b.46.1.1,c.65.1.1 128734,128735 1zkoA 136 1.665 1g1sA 162 2.886 d.169.1.1,g.3.11.1 65100,65101 2e63A 170 2.946 2evbA 74 2.989 1xocA 520 3.229 c.94.1.1 122201 1htp 131 3.260 1hpcA 131 3.336 b.84.1.1 28221 2hi2A 158 4.034 1ghj 79 4.573 1at0 145 5.241 1cnvA 299 6.189 c.1.8.5 28989 1qopB 396 6.450 c.79.1.1 35270 1y8oB 128 6.958 b.84.1.1 122759 2grvA 621 8.025 2q4zA 312 8.232 1tq5A 242 10.42 b.82.1.12 119311 2qf7A 1165 10.66 2bcoA 350 11.77 c.56.5.7 128302 2og2A 359 15.14 2ea7A 434 15.69 2jerA 389 17.44 1g94A 448 18.34 b.71.1.1,c.1.8.1 65169,65170 1bdo 80 19.16 2ghsA 326 19.61 b.68.6.1 135209 1ea9C 583 19.84 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 3c0dA 119 20.30 1vqoA 240 21.38 b.34.5.3,b.40.4.5 120361,120362 2yqcA 486 21.50 2b8nA 429 22.80 c.118.1.1 128093 1v0eA 666 23.78 b.68.1.2,b.108.1.3 113466,113467 1vpmA 169 23.88 d.38.1.1 113967 1k8mA 93 24.60 b.84.1.1 68314 2hhiA 204 26.07 2fv7A 331 26.84 c.72.1.1 134197 2bsdA 264 27.38 b.21.1.3,b.108.1.4,b.163.1.2 129081,129082,129083 2h8gA 267 27.64 1bdoA 80 28.04 b.84.1.1 28214 1ypvA 313 28.16 2qqiA 318 28.22 2j5uA 255 28.34 2anpA 291 29.96 c.56.5.4 127056 1at0A 145 31.90 b.86.1.1 28374 1uoyA 64 33.77 g.3.19.1 99709 2h1qA 270 33.86 2j58A 359 35.19 1mkaA 171 36.50 d.38.1.2 38543 1ftpA 133 38.64 b.60.1.2 27199 2qedA 258 42.15 2f02A 323 42.31 c.72.1.1 132649 1thv 207 42.75 1sc6A 404 44.24 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2hlzA 312 45.13 3buuA 229 45.84 1y56B 382 47.44 2gnoA 305 48.76 a.80.1.1,c.37.1.20 135414,135415 1pjxA 314 48.97 b.68.6.1 104167 1zruA 264 50.85 b.21.1.3,b.108.1.4,b.163.1.2 125560,125561,125562 2cu2A 337 53.72 2gnrA 145 53.76 1ftrA 296 55.70 d.58.33.1,d.58.33.1 39485,39486 2qj8A 332 55.73 1tzzA 392 55.82 c.1.11.2,d.54.1.1 112896,112897 2jo6A 113 57.40 3bwlA 126 57.69 1jv1A 505 60.55 c.68.1.5 71892 1ii2A 524 62.71 c.91.1.1,c.109.1.1 66146,66147 1lpjA 133 62.79 b.60.1.2 78123 1lfoA 127 62.94 b.60.1.2 27223 1tdzA 272 66.69 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 1jssA 224 66.77 d.129.3.2 71844 1bu6O 501 67.27 c.55.1.4,c.55.1.4 33499,33500 2pz4A 239 67.82 1oewA 329 68.53 b.50.1.2 86924 2ds0A 130 68.61 3fib 249 70.17 2er7E 330 73.18 b.50.1.2 26779 2vroA 532 73.46 1o6gA 710 75.48 b.69.7.1,c.69.1.4 81087,81088 2ddmA 283 76.03 2aehA 369 79.65 a.11.2.1,b.55.1.5,d.15.1.4 126625,126626,126627 1l6sA 323 80.52 c.1.10.3 73627 2bklA 695 80.86 1hvyA 288 81.56 d.117.1.1 41049 2bw0A 329 82.29 b.46.1.1,c.65.1.1 129303,129304 1amx 180 82.71 1goiA 499 84.41 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 2aaa 484 85.13 1kmoA 774 85.52 f.4.3.3 72753 2nwhA 317 85.82 1ci9A 392 86.12 e.3.1.1 64767 1qo8A 566 87.19 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 3cmsA 323 88.78 b.50.1.2 26865