# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1zkoA	136	0.5051		
1hpcA	131	1.203	b.84.1.1	28221
1htp	131	1.343		
2evbA	74	1.719		
2bcoA	350	2.179	c.56.5.7	128302
2odiA	238	3.102		
2e63A	170	3.179		
2qf7A	1165	3.558		
2q4zA	312	3.786		
1y8oB	128	5.209	b.84.1.1	122759
1ghj	79	7.306		
1rkd	309	7.382		
2blnA	305	9.000	b.46.1.1,c.65.1.1	128734,128735
3c0dA	119	10.46		
1k8mA	93	10.94	b.84.1.1	68314
1bdo	80	10.96		
2h1qA	270	12.62		
2fv7A	331	14.66	c.72.1.1	134197
1t5eA	360	15.94	f.46.1.1	106436
1vqoA	240	16.97	b.34.5.3,b.40.4.5	120361,120362
1yleA	342	19.09	d.108.1.8	123647
1m55A	197	19.09	d.89.1.3	74469
2ajrA	331	19.55	c.72.1.1	126892
1vm7A	311	22.62	c.72.1.1	108884
1l0gA	358	23.33	e.3.1.1	73400
1clc	639	23.94		
2nwhA	317	23.99		
1bdoA	80	27.04	b.84.1.1	28214
1clcA	639	29.89	a.102.1.2,b.1.18.2	18835,21872
2dcnA	311	30.98	c.72.1.1	131374
2j5uA	255	31.17		
1wpgA	994	34.84	b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1	114806,114807,114808,114809
1ekqA	272	34.91	c.72.1.2	34941
2rauA	354	36.86		
2hlzA	312	37.47		
1ub0A	258	48.20	c.72.1.2	88394
1tq5A	242	48.77	b.82.1.12	119311
2h4tA	626	48.90		
3bwvA	180	49.76		
1ee8A	266	49.77	a.156.1.2,b.113.1.1,g.39.1.8	75823,75824,75825
1p42A	270	50.60	d.14.1.7,d.14.1.7	87754,87755
1ftpA	133	50.84	b.60.1.2	27199
2o7iA	592	52.15		
2grvA	621	52.42		
2ddmA	283	55.84		
2h8gA	267	56.18		
1uqwA	509	56.74	c.94.1.1	99799
2gnrA	145	57.43		
2qm8A	337	58.46		
1y97A	238	59.37	c.55.3.5	122773
1rkdA	309	59.91	c.72.1.1	34928
1sgoA	139	60.40	d.82.3.1	98857
1kdj	102	62.36		
1pjjA	271	63.63	a.156.1.2,b.113.1.1,g.39.1.8	104164,104165,104166
1vz0A	230	64.70	a.4.14.1,d.268.1.1	108929,108930
1v1aA	309	65.19	c.72.1.1	100249
2ichA	335	66.67		
1v9sA	208	66.90	c.61.1.1	119894
2v78A	313	67.01		
1jssA	224	70.04	d.129.3.2	71844
1hw7A	255	72.71	d.193.1.1	61297
1llnA	262	73.87	d.165.1.1	84625
2oplA	187	75.28		
2go3A	267	76.42	d.14.1.7,d.14.1.7	135422,135423
1ywmA	200	77.76		
1bhuA	102	78.83	b.11.1.3	23631
1xocA	520	79.14	c.94.1.1	122201
1y56B	382	79.34		
1hvyA	288	83.68	d.117.1.1	41049
2qhpA	296	84.45		
1k2eA	156	85.83	d.113.1.1	72010
1lfoA	127	86.61	b.60.1.2	27223
1fmtA	314	89.16	b.46.1.1,c.65.1.1	25758,34174