# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1zkoA	136	1.064		
2bcoA	350	1.453	c.56.5.7	128302
1hpcA	131	1.994	b.84.1.1	28221
1htp	131	2.051		
2q4zA	312	2.655		
2evbA	74	3.288		
1y8oB	128	4.217	b.84.1.1	122759
2e63A	170	4.837		
1ghj	79	5.402		
1clcA	639	6.313	a.102.1.2,b.1.18.2	18835,21872
2odiA	238	6.673		
1clc	639	7.902		
2qf7A	1165	7.980		
2h1qA	270	15.61		
2blnA	305	17.80	b.46.1.1,c.65.1.1	128734,128735
1bdo	80	18.31		
1k8mA	93	22.22	b.84.1.1	68314
3c0dA	119	22.83		
1ftpA	133	27.89	b.60.1.2	27199
2j5uA	255	27.96		
1vqoA	240	28.03	b.34.5.3,b.40.4.5	120361,120362
1v9sA	208	31.29	c.61.1.1	119894
2h8gA	267	33.00		
1t5eA	360	33.94	f.46.1.1	106436
1yleA	342	38.89	d.108.1.8	123647
1rkd	309	39.02		
1lfoA	127	40.10	b.60.1.2	27223
1llnA	262	40.55	d.165.1.1	84625
2h4tA	626	40.91		
2nwhA	317	44.61		
1bdoA	80	45.51	b.84.1.1	28214
1ut9A	609	49.00	a.102.1.2,b.1.18.2	99912,99913
1p42A	270	51.40	d.14.1.7,d.14.1.7	87754,87755
1y56B	382	52.41		
1vz0A	230	55.14	a.4.14.1,d.268.1.1	108929,108930
1l0gA	358	56.49	e.3.1.1	73400
2ddmA	283	59.01		
2grvA	621	60.13		
1bhuA	102	60.69	b.11.1.3	23631
1kdj	102	65.86		
2o7iA	592	66.47		
1pjjA	271	67.60	a.156.1.2,b.113.1.1,g.39.1.8	104164,104165,104166
2fv7A	331	68.74	c.72.1.1	134197
2j58A	359	71.33		
1ub1A	133	73.54	d.10.1.3	99140
1xocA	520	74.12	c.94.1.1	122201
1ee8A	266	76.64	a.156.1.2,b.113.1.1,g.39.1.8	75823,75824,75825
3bwvA	180	78.15		
2go3A	267	78.80	d.14.1.7,d.14.1.7	135422,135423
2oplA	187	85.71		
2gnrA	145	88.50		
1vm7A	311	88.58	c.72.1.1	108884
1wpgA	994	88.58	b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1	114806,114807,114808,114809
2ajrA	331	88.62	c.72.1.1	126892
2rauA	354	89.32