# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1zkoA	136	0.3349		
2bcoA	350	0.7685	c.56.5.7	128302
1htp	131	0.7763		
1hpcA	131	0.8102	b.84.1.1	28221
2evbA	74	0.8156		
1y8oB	128	1.396	b.84.1.1	122759
2odiA	238	2.476		
2q4zA	312	2.594		
1ghj	79	2.855		
2e63A	170	2.917		
2qf7A	1165	4.757		
1clcA	639	8.313	a.102.1.2,b.1.18.2	18835,21872
1clc	639	9.921		
1k8mA	93	11.59	b.84.1.1	68314
2h1qA	270	11.65		
2h4tA	626	13.62		
1bdo	80	13.83		
1v9sA	208	16.60	c.61.1.1	119894
1t5eA	360	17.62	f.46.1.1	106436
1lfoA	127	19.46	b.60.1.2	27223
1bdoA	80	19.87	b.84.1.1	28214
1p42A	270	20.33	d.14.1.7,d.14.1.7	87754,87755
2nwhA	317	22.87		
1yleA	342	23.81	d.108.1.8	123647
1llnA	262	25.93	d.165.1.1	84625
2debA	653	26.65		
2go3A	267	27.05	d.14.1.7,d.14.1.7	135422,135423
3c0dA	119	29.59		
1ftpA	133	36.40	b.60.1.2	27199
1vqoA	240	37.49	b.34.5.3,b.40.4.5	120361,120362
2ajrA	331	37.62	c.72.1.1	126892
1ywmA	200	39.52		
2j5uA	255	43.53		
1l0gA	358	45.01	e.3.1.1	73400
1vz0A	230	47.11	a.4.14.1,d.268.1.1	108929,108930
1rkd	309	47.11		
2h8gA	267	47.65		
1y97A	238	47.87	c.55.3.5	122773
2dc0A	434	48.77		
1wpgA	994	51.33	b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1	114806,114807,114808,114809
3c6kA	381	51.51		
2qj8A	332	51.97		
2d73A	738	53.10		
2fv7A	331	55.87	c.72.1.1	134197
1ee8A	266	59.91	a.156.1.2,b.113.1.1,g.39.1.8	75823,75824,75825
2oplA	187	65.69		
1tq5A	242	67.41	b.82.1.12	119311
1kdj	102	67.70		
2blnA	305	69.81	b.46.1.1,c.65.1.1	128734,128735
1ub1A	133	70.92	d.10.1.3	99140
1bhuA	102	74.37	b.11.1.3	23631
1vm7A	311	75.25	c.72.1.1	108884
2ddmA	283	75.70		
2ehjA	208	75.82		
3cdxA	354	78.70		
2rauA	354	81.84		
1kgyA	181	82.16	b.18.1.4	72449
1hvyA	288	83.28	d.117.1.1	41049
2coiA	386	83.33		
1a3yA	149	88.31	b.60.1.1	27110
3bwvA	180	88.96