# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1zkoA	136	0.6091		
1htp	131	1.003		
1hpcA	131	1.295	b.84.1.1	28221
2evbA	74	1.502		
2q4zA	312	1.818		
2bcoA	350	2.180	c.56.5.7	128302
1y8oB	128	3.802	b.84.1.1	122759
2e63A	170	5.155		
1ghj	79	5.387		
2qf7A	1165	5.690		
2odiA	238	5.800		
2h1qA	270	5.851		
2blnA	305	6.133	b.46.1.1,c.65.1.1	128734,128735
1k8mA	93	10.75	b.84.1.1	68314
1bdo	80	11.76		
1clcA	639	15.76	a.102.1.2,b.1.18.2	18835,21872
1vqoA	240	17.82	b.34.5.3,b.40.4.5	120361,120362
1lfoA	127	19.12	b.60.1.2	27223
1clc	639	19.63		
1kdj	102	21.46		
1t5eA	360	22.07	f.46.1.1	106436
2dc0A	434	22.44		
1ftpA	133	25.40	b.60.1.2	27199
2h4tA	626	27.18		
1bdoA	80	27.70	b.84.1.1	28214
2ajrA	331	28.05	c.72.1.1	126892
3c0dA	119	29.20		
1p42A	270	31.10	d.14.1.7,d.14.1.7	87754,87755
2h8gA	267	34.15		
2nwhA	317	34.43		
1yleA	342	34.57	d.108.1.8	123647
2a9gA	418	36.04	d.126.1.4	126435
1tq5A	242	36.79	b.82.1.12	119311
1rkd	309	40.37		
1wpgA	994	41.36	b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1	114806,114807,114808,114809
2fv7A	331	44.41	c.72.1.1	134197
1vm7A	311	47.82	c.72.1.1	108884
1v9sA	208	49.32	c.61.1.1	119894
1llnA	262	52.06	d.165.1.1	84625
1l0gA	358	58.18	e.3.1.1	73400
1ee8A	266	58.66	a.156.1.2,b.113.1.1,g.39.1.8	75823,75824,75825
2go3A	267	58.92	d.14.1.7,d.14.1.7	135422,135423
2debA	653	62.60		
2j5uA	255	65.75		
1bxvA	91	66.31	b.6.1.1	22875
2hlzA	312	68.44		
1ywmA	200	69.25		
2ddmA	283	70.20		
2dcnA	311	72.95	c.72.1.1	131374
1hw7A	255	76.48	d.193.1.1	61297
2ichA	335	78.08		
2icsA	379	79.73	b.92.1.8,c.1.9.14	137241,137242
2d73A	738	80.60		
2qj8A	332	81.56		
1vz0A	230	82.40	a.4.14.1,d.268.1.1	108929,108930
1u7eB	154	83.97		
1zud2	66	87.46		
1y56B	382	89.83