# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ftpA	133	13.19	b.60.1.2	27199
2qj8A	332	17.66		
1zkoA	136	20.18		
2fmpA	335	26.95	a.60.6.1,a.60.12.1,d.218.1.2	133786,133787,133788
2dc0A	434	29.92		
2eveA	157	36.77	b.122.1.8	132427
2gnoA	305	38.33	a.80.1.1,c.37.1.20	135414,135415
1jtdB	273	41.27	b.69.5.2	67265
2bcoA	350	43.33	c.56.5.7	128302
1lfoA	127	45.16	b.60.1.2	27223
1jssA	224	48.50	d.129.3.2	71844
1j99A	293	54.48	c.37.1.5	71618
2e63A	170	55.17		
1t5eA	360	61.49	f.46.1.1	106436
1moqA	368	62.27	c.80.1.1	35302
1twfB	1224	63.78	e.29.1.1	112726
2dyqA	144	64.93		
1njgA	250	67.23	c.37.1.20	85785
1hw7A	255	68.84	d.193.1.1	61297
1i52A	236	70.12	c.68.1.13	61767
1yleA	342	73.77	d.108.1.8	123647
1jv1A	505	79.32	c.68.1.5	71892
2yqcA	486	81.05		
1tq5A	242	81.99	b.82.1.12	119311
1llnA	262	82.80	d.165.1.1	84625
1ztcA	221	84.19	d.157.1.11	125635
2d27A	149	86.09		
1vziA	126	86.87	b.1.13.1,g.41.5.2	108967,108968