# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1y8oB	128	2.034	b.84.1.1	122759
2evbA	74	2.187		
1ghj	79	4.761		
1zkoA	136	6.342		
2qj8A	332	9.014		
1k8mA	93	16.46	b.84.1.1	68314
1zpdA	568	19.07	c.31.1.3,c.36.1.5,c.36.1.9	31741,31785,31786
1oroA	213	19.91	c.61.1.1	34093
2qf7A	1165	22.09		
1htp	131	22.80		
2g1iA	563	22.84		
1clc	639	27.33		
1hpcA	131	27.61	b.84.1.1	28221
1lh0A	213	32.52	c.61.1.1	73896
1t5eA	360	32.89	f.46.1.1	106436
1vqoA	240	33.76	b.34.5.3,b.40.4.5	120361,120362
1havA	217	34.05	b.47.1.4	26423
1opr	213	35.33		
2odiA	238	38.86		
1bdo	80	39.05		
1clcA	639	44.04	a.102.1.2,b.1.18.2	18835,21872
2er7E	330	45.43	b.50.1.2	26779
2grvA	621	45.57		
1q7gA	359	46.77	c.2.1.3,d.81.1.2	96038,96039
3cdxA	354	47.21		
2ajrA	331	49.37	c.72.1.1	126892
1qq9A	284	50.67	c.56.5.4	33841
2fmpA	335	55.69	a.60.6.1,a.60.12.1,d.218.1.2	133786,133787,133788
2abqA	306	55.82	c.72.1.1	126528
2h36X	112	60.61		
2hdeA	148	66.73		
2apjA	260	67.61	c.23.10.7	127128
1ftpA	133	69.93	b.60.1.2	27199
1bdoA	80	72.74	b.84.1.1	28214
1m32A	366	76.18	c.67.1.3	78508
2nwhA	317	78.20		
1jtdB	273	79.12	b.69.5.2	67265
2vojA	371	81.02		
2v78A	313	82.88		
2h1rA	299	83.82		
2hrvA	142	83.87	b.47.1.4	26429
1vk1A	242	84.87	d.268.1.2	108634
2j5uA	255	85.88		
2d4eA	515	86.39		
1llnA	262	86.86	d.165.1.1	84625