# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1suuA 312 0.1951 b.68.10.1 99006 1qh5A 260 1.126 d.157.1.2 42057 2qj8A 332 1.408 1qq4A 198 1.816 b.47.1.1 25768 1y8oB 128 2.279 b.84.1.1 122759 1zkoA 136 3.905 1zi0A 307 4.161 1ssxA 198 5.229 b.47.1.1 98978 1cqqA 180 6.258 b.47.1.4 26422 1pguA 615 7.538 b.69.4.1,b.69.4.1 88069,88070 2gjcA 326 10.03 c.3.1.6 135280 1htp 131 10.87 1g87A 614 11.62 a.102.1.2,b.2.2.2 83275,83276 2cy5A 140 11.73 b.55.1.2 131018 1vrmA 325 12.58 d.96.2.1 120472 2sfaA 191 13.66 b.47.1.1 25815 2h14A 317 13.75 1hpcA 131 13.95 b.84.1.1 28221 2z2nA 299 14.78 2gcuA 245 14.92 1erjA 393 15.48 b.69.4.1 27660 2gnqA 336 15.88 1v82A 253 17.65 c.68.1.7 108415 3c96A 415 18.01 1z2zA 446 18.34 1gxrA 337 18.96 b.69.4.1 70722 2hy1A 280 21.60 1nkqA 259 21.60 d.177.1.1 103862 2p9rA 102 22.10 1ghj 79 22.25 2evbA 74 24.34 1l1nA 183 24.46 b.47.1.4 73476 1r5mA 425 25.53 1zvtA 256 25.88 2j9iA 421 26.28 1yymG 313 27.33 d.172.1.1 124232 3cdxA 354 28.11 1l0qA 391 32.08 b.1.3.1,b.69.2.3 77644,77645 1v84A 253 33.74 c.68.1.7 108419 1gz2A 142 33.74 d.169.1.1 83392 2uzxB 727 34.65 1wp5A 323 35.47 b.68.10.1 114780 1vpmA 169 36.12 d.38.1.1 113967 2gc7A 386 36.38 b.69.2.1 134954 2sgaA 181 36.89 b.47.1.1 25808 1a0rB 340 40.10 b.69.4.1 27658 2cxvA 219 41.00 b.47.1.4 131012 2p18A 311 41.74 2ewcA 126 43.18 d.79.1.1 132454 1t3qB 788 43.69 d.41.1.1,d.133.1.1 106369,106370 3c26A 266 45.20 1lvmA 229 45.86 b.47.1.3 78243 2q9uA 414 48.71 2cmtA 172 50.41 1uf3A 228 50.52 d.159.1.6 99317 3byqA 193 50.82 1jofA 365 50.84 b.69.10.1 71775 2bphA 140 50.89 2yvtA 260 51.96 1qpoA 284 52.56 c.1.17.1,d.41.2.1 29561,38597 2h5cA 198 52.85 b.47.1.1 136145 1bdoA 80 53.56 b.84.1.1 28214 2pmqA 377 56.18 2ouaA 188 57.70 2qtpA 194 58.09 1lnsA 763 59.67 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1bdo 80 61.38 2p17A 277 62.20 1yu2A 381 62.89 b.163.1.1,d.169.1.8 124029,124030 1oygA 447 63.23 b.67.2.2 93726 2bs3A 656 63.53 a.7.3.1,c.3.1.4,d.168.1.1 129042,129043,129044 2aujD 309 67.99 2sga 181 68.95 2ef7A 133 69.38 2q0lA 311 70.05 2oitA 434 70.31 2r3uA 211 70.73 1nnwA 252 71.30 d.159.1.5 80674 1k32A 1045 73.08 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1fmtA 314 73.87 b.46.1.1,c.65.1.1 25758,34174 2qf3A 243 73.90 2fyqA 194 75.44 1przA 252 75.44 d.265.1.3 95064 2hrvA 142 75.89 b.47.1.4 26429 1dt9A 437 76.23 c.55.4.2,d.79.3.2,d.91.1.1 33738,39815,40257 1nr0A 611 79.07 b.69.4.1,b.69.4.1 86078,86079 2qwuA 211 79.93 1havA 217 80.22 b.47.1.4 26423 2ahdA 165 80.54 d.159.1.7 126752 1g9mG 321 82.07 d.172.1.1 42492 2eisA 133 82.49 3pmgA 561 83.05 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1mkaA 171 83.50 d.38.1.2 38543 2hljA 157 83.81 d.38.1.1 136570 2p38A 166 84.11 1hzoA 271 85.32 e.3.1.1 71092 1szwA 379 87.61 d.265.1.4 99047 2pjsA 119 88.60 2gk3A 256 89.24 2qa9E 185 89.34