TARGET:= T0397

# The manual hits came from VAST alignments of M1-K82/try2-opt3
# and from the VAST alignments for G80-E150/try4-opt3
MANUAL_TOP_HITS:= 1jicA 2fb7A 2eheA 2q41A 2q0dA 2pt6A 2pwpA 1y96A	\
		  3crkC 2evbA 3bg3A 3bg5A 1y8oB 1hpcA 1bdoA 1zkoA

# alignments failed: 1l9uC

# NMR models for G80-E150: 1o78A 2dneA 1iyuA 1dc2A=1a5eA 1gjxA  3bdoA
#  1z6hA 1pmrA 1a6xA


REAL_PDB:=3d4rA

include /projects/compbio/experiments/protein-predict/casp8/starter-directory/Make.main


M1-K82:
	${STARTER_SCRIPTS}/split-into-domains \
		-first 1 -length 82 \
		-advance  99999 \
		-starter ${STARTER} \
		--nomake < ${TARGET}.a2m


G80-E150:
	${STARTER_SCRIPTS}/split-into-domains \
		-first 80 -length 999 \
		-advance  99999 \
		-starter ${STARTER} \
		--nomake < ${TARGET}.a2m


subdomain:
	${STARTER_SCRIPTS}/split-into-domains \
		-first FFF -length LLL \
		-advance  99999 \
		-starter ${STARTER} \
		--nomake < ${TARGET}.a2m